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Configuration options

Jummp is configurable at runtime and reads its configuration from a Properties file. The location of the file can be specified through the JUMMP_CONFIG environment variable. If this location is not specified, the application looks for the file at ~/.jummp.properties. If this is also not found, then Jummp assumes that the configuration file does not exist, and expects the user to create one using the setup process. Unfortunately the Jummp application is not able to pick up changes of the configuration (either by editing the file directly or using config interfaces), so the web application needs to be restarted (e.g. by restarting the Tomcat server).

#!bash

## Example Configuration file ##
#Jummp Configuration
#Wed Nov 20 15:44:01 GMT 2013
jummp.authenticationHash.maxInactiveTime=1800000
jummp.authenticationHash.removeInterval=1800000
jummp.authenticationHash.startRemoveOffset=300000
jummp.database.type=MYSQL
jummp.database.database=jummp
jummp.database.password=your_password
jummp.database.port=3306
jummp.database.server=localhost
jummp.database.username=jummp
jummp.export.jms=false
jummp.plugins.sbml.validation=false
jummp.remote=false
# Model identifier settings
jummp.model.id.submission.part1.type=literal
jummp.model.id.submission.part1.suffix=MODEL
jummp.model.id.submission.part2.type=numerical
jummp.model.id.submission.part2.fixed=false
jummp.model.id.submission.part2.width=10
# end model identifier settings
# Search settings
## strategy: omicsdi/solr
jummp.search.strategy=omicsdi
jummp.search.exportFolder=/path/to/folder/where/OmicsDIXML/will/be/stored/file.xml
jummp.search.url=http://addressOf.solr.machine:$SOLR_PORT/solr/
jummp.search.folder=/path/to/folder/where/the/search/index/should/be/stored/
jummp.search.pathToIndexerExecutable=/path/to/fat/indexer.jar
# end Search settings
## You must have two following attributes if you choose omicsdi as your search strategy
jummp.metadata.officialDatabaseName=Your Repository Name
jummp.metadata.officialDatabaseDescription=Short description of your model repository

jummp.security.anonymousRegistration=true
jummp.security.authenticationBackend=database
# The security policy is available in the scripts/ folder in the source code.
jummp.security.cms.policy=/path/to/WeceemSecurity.groovy
jummp.security.mailer.auth=true
jummp.security.mailer.host=your.smtp.server
jummp.security.mailer.password=mailPassword
jummp.security.mailer.port=587
jummp.security.mailer.tlsrequired=true
jummp.security.mailer.username=myUserName
jummp.security.curatorByDefault=false
jummp.security.certificationRole=ROLE_QC_PROVIDER
jummp.security.registration.email.adminAddress=admin@org.ac.uk
jummp.security.registration.email.body=Dear {{REALNAME}},\r\n\r\nAn account to access the Model Repository has been created for you. Your username is\: {{USERNAME}}.\r\n\r\nYour automatically generated password is\: {{PASSWORD}} (you can easily change it after your first login).\r\n\r\nGood luck\! jummp.security.registration.email.send=true
jummp.security.registration.email.sendToAdmin=false
jummp.security.registration.email.sender=admin@org.ac.uk
jummp.security.registration.email.subject=[My Model Repository] new account activation
jummp.security.resetPassword.email.body=Dear {{REALNAME}}, \r\n\r\nA password reset request was received for your account. Please reset your password by going to {{URL}}.\r\n\r\nMy Model Repository
jummp.security.resetPassword.email.subject=[My Model Repository] password reset request
jummp.server.protection=false
jummp.server.url=http\://localhost\:8080/jummp/
jummp.vcs.exchangeDirectory=/home/user/reps/exchange
jummp.vcs.plugin=git
jummp.vcs.workingDirectory=/home/user/reps/working
################# Context specific help info
# root URL for help
jummp.context.help.root=http://wwwdev.ebi.ac.uk/compneur-srv/docs-ddmore-repository/
# all other pages
jummp.context.help.browse=model_browsing.html
jummp.context.help.search=model_search.html
jummp.context.help.login=login.html
jummp.context.help.display=model_display.html
jummp.context.help.archives=model_archives.html
jummp.context.help.submission=model_submission.html
jummp.context.help.update=model_update.html
jummp.context.help.profile=user_profiles.html
jummp.context.help.sharing=model_sharing.html
jummp.context.help.teams=teams.html
jummp.context.help.notifications=notifications.html

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