kleinstein / alakazam / issues

Title	T	P	Status	Assignee	Created	Updated
#58: add `fields` to writeChangeoDb to split a db file into multiple files	proposal	minor	invalid		2017-12-06	2018-03-14
#57: readChangeoDb reads a list of files in parallel	proposal	minor	invalid		2017-12-06	2018-03-14
#56: `readChangeoDb` fails when input file contains non-standard column names	bug	minor	resolved		2017-11-20	2017-11-20
#53: Add clone count test to countGenes unit tests	enhancement	minor	resolved	Jason Vander Heiden	2017-05-31	2018-03-15
#51: readChangeoDb failed in sbatch mode on Farnam	bug	minor	resolved		2017-05-10	2017-06-05
#50: getSegment automatically strips D from names	proposal	minor	invalid	Roy Jiang	2017-04-28	2017-09-21
#49: calcBaseline and calcBaselineHelper : testStatistic arg for imbalanced wrong	bug	minor	resolved		2017-02-23	2017-02-23
#47: Write test for distToNearest when seq has stop codon	task	minor	invalid	ssnn	2016-08-05	2017-09-21
#45: Gene usage and RDI vignette	enhancement	minor	resolved		2016-07-17	2017-05-31
#43: Add clone subsetting to countGenes	enhancement	minor	resolved	Jason Vander Heiden	2016-07-08	2016-07-11
#42: getSeqMatrix vs getDistanceMatrix	enhancement	minor	invalid	ssnn	2016-06-10	2016-06-10
#39: Consider having readChangeoDb wrap fread() instead of read.table()	enhancement	minor	resolved	Jason Vander Heiden	2016-03-03	2016-04-13
#38: Add tigger gene ordering function	enhancement	minor	resolved	Jason Vander Heiden	2016-02-26	2016-07-12
#37: Conversion to stringi	enhancement	minor	wontfix	Jason Vander Heiden	2016-02-07	2017-05-05
#34: More diversity plots	enhancement	minor	resolved	Jason Vander Heiden	2016-01-26	2018-03-14
#33: getGene returns first not Not Localized results	proposal	minor	resolved	ssnn	2016-01-25	2018-03-15
#31: R CMD Check warning	enhancement	minor	resolved	Jason Vander Heiden	2015-12-18	2016-01-22
#28: Add CDR3 and FRW4 to extractVRegion	enhancement	minor	wontfix	Jason Vander Heiden	2015-12-10	2018-03-14
#24: R CMD Check gravy warning	enhancement	minor	resolved	ssnn	2015-12-04	2015-12-08
#23: R CMD Check igraph warning	enhancement	minor	resolved	Jason Vander Heiden	2015-12-04	2015-12-04
#21: Add evenness to diversity output	enhancement	minor	resolved	Jason Vander Heiden	2015-12-03	2016-01-26
#20: Parallelize diversity and abundance calculations	enhancement	minor	new	Jason Vander Heiden	2015-11-20	2015-11-20
#17: Move amino acid analysis from repertoire into main alakazam package	enhancement	minor	resolved	ssnn	2015-11-20	2015-12-21
#16: Add annotation collapse without duplicate removal to collapseDuplicates	enhancement	minor	resolved	Jason Vander Heiden	2015-08-21	2017-09-21
#13: Cannot knit lineage vignette pdf	bug	minor	resolved	Jason Vander Heiden	2015-06-19	2015-12-08

#58: add `fields` to writeChangeoDb to split a db file into multiple files

proposal

minor

invalid

2017-12-06

2018-03-14

#57: readChangeoDb reads a list of files in parallel

proposal

minor

invalid

2017-12-06

2018-03-14

#56: `readChangeoDb` fails when input file contains non-standard column names

bug

minor

resolved

2017-11-20

#53: Add clone count test to countGenes unit tests

enhancement

minor

resolved

Jason Vander Heiden

2017-05-31

2018-03-15

#51: readChangeoDb failed in sbatch mode on Farnam

bug

minor

resolved

2017-05-10

2017-06-05

#50: getSegment automatically strips D from names

proposal

minor

invalid

Roy Jiang

2017-04-28

2017-09-21

#49: calcBaseline and calcBaselineHelper : testStatistic arg for imbalanced wrong

bug

minor

resolved

2017-02-23

#47: Write test for distToNearest when seq has stop codon

task

minor

invalid

ssnn

2016-08-05

2017-09-21

#45: Gene usage and RDI vignette

enhancement

minor

resolved

2016-07-17

2017-05-31

#43: Add clone subsetting to countGenes

enhancement

minor

resolved

Jason Vander Heiden

2016-07-08

2016-07-11

#42: getSeqMatrix vs getDistanceMatrix

enhancement

minor

invalid

ssnn

2016-06-10

#39: Consider having readChangeoDb wrap fread() instead of read.table()

enhancement

minor

resolved

Jason Vander Heiden

2016-03-03

2016-04-13

#38: Add tigger gene ordering function

enhancement

minor

resolved

Jason Vander Heiden

2016-02-26

2016-07-12

#37: Conversion to stringi

enhancement

minor

wontfix

Jason Vander Heiden

2016-02-07

2017-05-05

#34: More diversity plots

enhancement

minor

resolved

Jason Vander Heiden

2016-01-26

2018-03-14

#33: getGene returns first not Not Localized results

proposal

minor

resolved

ssnn

2016-01-25

2018-03-15

#31: R CMD Check warning

enhancement

minor

resolved

Jason Vander Heiden

2015-12-18

2016-01-22

#28: Add CDR3 and FRW4 to extractVRegion

enhancement

minor

wontfix

Jason Vander Heiden

2015-12-10

2018-03-14

#24: R CMD Check gravy warning

enhancement

minor

resolved

ssnn

2015-12-04

2015-12-08

#23: R CMD Check igraph warning

enhancement

minor

resolved

Jason Vander Heiden

2015-12-04

#21: Add evenness to diversity output

enhancement

minor

resolved

Jason Vander Heiden

2015-12-03

2016-01-26

#20: Parallelize diversity and abundance calculations

enhancement

minor

new

Jason Vander Heiden

2015-11-20

#17: Move amino acid analysis from repertoire into main alakazam package

enhancement

minor

resolved

ssnn

2015-11-20

2015-12-21

#16: Add annotation collapse without duplicate removal to collapseDuplicates

enhancement

minor

resolved

Jason Vander Heiden

2015-08-21

2017-09-21

#13: Cannot knit lineage vignette pdf

bug

minor

resolved

Jason Vander Heiden

2015-06-19

2015-12-08

Issues

Issues (26–50 of 55)