Check behavior of DefineClones when JUNCTION is None
Issue #55
resolved
Chris found a bug a long time ago, were 'None' was being interpreted as a valid junction of length 4. We need to see if this is still true, and fix it if that's the case. I think empty sequence fields end up as empty strings, but we should probably still handle the 'None' case for safety.
Comments (4)
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reporter Doh. It does look like a duplicate. Though, it doesn't appear to be fixed. I just ran a test with JUNCTION='None' and the sequence made it into the clone-pass file with the junction sequence 'NONE'.
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reporter The best way to handle this might be either in
Receptor.IgRecord
orIO.readDbFile
by ensuring that the string 'None' gets converted to the constant None. -
- changed status to resolved
Fixed this so sequence fields that are 'NA' or 'None' are converted to NoneType or '' when read in.
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I believe this was Issue
#34and I resolved it awhile ago.