distToNearest failed in sbatch mode on Farnam

[Julian Zhou]

 *** caught illegal operation ***
address 0x2b83413b2c88, cause 'illegal operand'

Traceback:
 1: .Call("dplyr_mutate_impl", PACKAGE = "dplyr", df, dots)
 2: mutate_impl(.data, dots)
 3: mutate_.tbl_df(tbl_df(.data), .dots = dots)
 4: mutate_(tbl_df(.data), .dots = dots)
 5: as.data.frame(mutate_(tbl_df(.data), .dots = dots))
 6: mutate_.data.frame(.tbl, .dots = vars)
 7: mutate_(.tbl, .dots = vars)
 8: mutate_at(data, columns, funs(toupper))
 9: toupperColumns(db, c(sequenceColumn))
10: distToNearest(db, sequenceColumn = "JUNCTION", model = "ham",     normalize = "len", first = F, nproc = num.cores.foreach)
An irrecoverable exception occurred. R is aborting now ...
/var/spool/slurmd/job1509740/slurm_script: line 14: 39814 Illegal instruction     Rscript $NAME_RSCRIPT

[Julian Zhou]

Connected to Issue #84

[Julian Zhou]

Only happens on the kleinstein queue. Fine on the general queue.

[Jason Vander Heiden]

Apparently, we need to compile tidyverse packages on the m915 node or they won't work on the m915 node. See the Problematic R package compilation section of the cluster wiki:
https://bitbucket.org/kleinstein/immcantation/wiki/ClusterConfig

[Julian Zhou]

Resolved Issue #85; OBSERVED -> MU_COUNT; EXPECTED -> MU_EXPECTED.

→ <<cset 5f5ed0649474>>

[Julian Zhou]

Resolved Issue #85; OBSERVED -> MU_COUNT; EXPECTED -> MU_EXPECTED.

→ <<cset 5f5ed0649474>>

[Julian Zhou]

Resolved Issue #85; OBSERVED -> MU_COUNT; EXPECTED -> MU_EXPECTED.

→ <<cset 5f5ed0649474>>

[Julian Zhou]

Resolved Issue #85; OBSERVED -> MU_COUNT; EXPECTED -> MU_EXPECTED.

→ <<cset 5f5ed0649474>>