BAM QC: add an option to control skip-duplicates operation

Issue #26 resolved
Konstantin Okonechnikov repo owner created an issue

Add a specific option to select the mode of skipping the duplicates.

Three modes can be applied:

  • skip both marked by duplicate flag and the detected (default)
  • skip only marked by duplicate flag
  • skip only detected by Qualimap algorithm

Comments (3)

  1. Log in to comment