mroachawri / purge_haplotigs / issues

Title	T	P	Status	Assignee	Created	Updated
#4: purge_haplotigs purge failed	task	major	resolved	Michael Roach	2018-01-02	2018-09-18
#10: purge step seems stuck	bug	minor	resolved		2018-07-13	2018-09-18
#7: use raw, corrected or trimmed reads?	task	major	resolved		2018-05-24	2018-09-18
#9: speed improvements	enhancement	minor	resolved		2018-07-11	2018-09-18
#14: Sporadic crashing during pariwise comparisons	bug	major	resolved	Michael Roach	2018-09-09	2018-09-18
#13: Choosing cutoffs for a mostly haploid assembly	bug	major	closed		2018-08-07	2018-08-08
#5: cutoff for step2 for one-peak assemblies	proposal	minor	resolved		2018-03-25	2018-08-06
#11: issue with fasta headers printed in purge.pl output	bug	major	resolved		2018-07-19	2018-07-21
#8: "-low 0" option fails in contigcov	bug	minor	resolved		2018-07-09	2018-07-09
#3: different CIGAR format?	bug	major	resolved		2017-09-18	2018-05-22
#6: low read coverage of small contigs with long-reads	enhancement	minor	on hold	Michael Roach	2018-04-06	2018-05-22
#2: could not parse delta file	bug	major	resolved		2017-09-04	2017-09-22
#1: also a-ctgs in input?	proposal	major	resolved		2017-05-08	2017-08-31

#4: purge_haplotigs purge failed

task

major

resolved

Michael Roach

2018-01-02

2018-09-18

#10: purge step seems stuck

bug

minor

resolved

2018-07-13

2018-09-18

#7: use raw, corrected or trimmed reads?

task

major

resolved

2018-05-24

2018-09-18

#9: speed improvements

enhancement

minor

resolved

2018-07-11

2018-09-18

#14: Sporadic crashing during pariwise comparisons

bug

major

resolved

Michael Roach

2018-09-09

2018-09-18

#13: Choosing cutoffs for a mostly haploid assembly

bug

major

closed

2018-08-07

2018-08-08

#5: cutoff for step2 for one-peak assemblies

proposal

minor

resolved

2018-03-25

2018-08-06

#11: issue with fasta headers printed in purge.pl output

bug

major

resolved

2018-07-19

2018-07-21

#8: "-low 0" option fails in contigcov

bug

minor

resolved

2018-07-09

#3: different CIGAR format?

bug

major

resolved

2017-09-18

2018-05-22

#6: low read coverage of small contigs with long-reads

enhancement

minor

on hold

Michael Roach

2018-04-06

2018-05-22

#2: could not parse delta file

bug

major

resolved

2017-09-04

2017-09-22

#1: also a-ctgs in input?

proposal

major

resolved

2017-05-08

2017-08-31

Issues

Issues (151–163 of 163)