Snippets

osimis List all key values from all worklists files in a folder

Updated by Alain Mazy
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File dumpWorklists.py Added

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+import argparse
+import dicom # = pydicom
+import glob
+import os
+
+# useage:
+# python3 dumpWorklists.py --folder=/var/lib/orthanc/db/worklists/
+
+if __name__ == "__main__":
+
+    try:
+        parser = argparse.ArgumentParser("Dumps info from a set of worklists contained in a folder (i.e a folder that the Orthanc modality worklist plugin is serving)")
+        parser.add_argument('-f', '--folder', help = "the folder containing the worklidsts (.wl) files.url of the orthanc to monitor")
+        args = parser.parse_args()
+
+        fileFilter = os.path.join("{folder}".format(folder = args.folder), "*.wl")
+        for wlFile in glob.glob(fileFilter):
+            try:
+                wl = dicom.read_file(wlFile)
+                values = [wl.PatientID, str(wl.PatientName), wl.AccessionNumber, wl.ScheduledProcedureStepSequence[0].ScheduledProcedureStepStartDate, wl.ScheduledProcedureStepSequence[0].Modality, wlFile]
+                print(", ".join(values))
+            except Exception as ex:
+                print(wlFile + ": " + str(ex))
+
+    except Exception as ex:
+        print("Unhandled exception: " + str(ex))

File snippet.txt Deleted

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-import argparse
-import dicom # = pydicom
-import glob
-import os
-
-# useage:
-# python3 dumpWorklists.py --folder=/var/lib/orthanc/db/worklists/
-
-if __name__ == "__main__":
-
-    try:
-        parser = argparse.ArgumentParser("Dumps info from a set of worklists contained in a folder (i.e a folder that the Orthanc modality worklist plugin is serving)")
-        parser.add_argument('-f', '--folder', help = "the folder containing the worklidsts (.wl) files.url of the orthanc to monitor")
-        args = parser.parse_args()
-
-        fileFilter = os.path.join("{folder}".format(folder = args.folder), "*.wl")
-        for wlFile in glob.glob(fileFilter):
-            try:
-                wl = dicom.read_file(wlFile)
-                values = [wl.PatientID, str(wl.PatientName), wl.AccessionNumber, wl.ScheduledProcedureStepSequence[0].ScheduledProcedureStepStartDate, wl.ScheduledProcedureStepSequence[0].Modality, wlFile]
-                print(", ".join(values))
-            except Exception as ex:
-                print(wlFile + ": " + str(ex))
-
-    except Exception as ex:
-        print("Unhandled exception: " + str(ex))
Created by Alain Mazy
View revision

File snippet.txt Added

  • Ignore whitespace
  • Hide word diff 
+import argparse
+import dicom # = pydicom
+import glob
+import os
+
+# useage:
+# python3 dumpWorklists.py --folder=/var/lib/orthanc/db/worklists/
+
+if __name__ == "__main__":
+
+    try:
+        parser = argparse.ArgumentParser("Dumps info from a set of worklists contained in a folder (i.e a folder that the Orthanc modality worklist plugin is serving)")
+        parser.add_argument('-f', '--folder', help = "the folder containing the worklidsts (.wl) files.url of the orthanc to monitor")
+        args = parser.parse_args()
+
+        fileFilter = os.path.join("{folder}".format(folder = args.folder), "*.wl")
+        for wlFile in glob.glob(fileFilter):
+            try:
+                wl = dicom.read_file(wlFile)
+                values = [wl.PatientID, str(wl.PatientName), wl.AccessionNumber, wl.ScheduledProcedureStepSequence[0].ScheduledProcedureStepStartDate, wl.ScheduledProcedureStepSequence[0].Modality, wlFile]
+                print(", ".join(values))
+            except Exception as ex:
+                print(wlFile + ": " + str(ex))
+
+    except Exception as ex:
+        print("Unhandled exception: " + str(ex))
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