petrnovak / repex_tarean / issues

Title	T	P	Status	Assignee	Created	Updated
#72: Is there a way to have TAREAN run k-mer analysis / logo generation on "other" hits	task	major	new		2022-03-25	2022-03-25
#5: move adding new attributes to init in classes	task	major	resolved	Petr Novak	2016-01-05	2016-01-05
#1: check if make was run	proposal	minor	resolved		2015-12-21	2016-03-16
#16: adjust range of kmer calculation	proposal	major	new		2016-02-09	2016-02-09
#7: add option to set size of sample for input sequences	proposal	minor	resolved		2016-01-05	2016-01-18
#10: use config as singleton object to store global options	proposal	major	resolved		2016-01-05	2016-01-06
#9: make better locations of modules	proposal	minor	resolved		2016-01-05	2016-01-06
#68: To classify LTRs	enhancement	major	new		2021-05-27	2021-05-27
#2: impove export_clusters_files_multiple in graph files	enhancement	major	resolved		2015-12-21	2017-11-14
#57: add vallidation of custom database	enhancement	major	new		2017-11-13	2017-11-13
#19: improve prerun	enhancement	major	resolved		2016-03-02	2017-10-10
#12: skip loading packages if --help option is used	enhancement	minor	resolved		2016-01-14	2017-10-10
#55: round number in output html table report	enhancement	minor	resolved		2016-11-22	2017-10-03
#8: skip unnecessary computation in tarean mode	enhancement	minor	resolved		2016-01-05	2017-10-03
#26: add confindence categories for satellite prediction	enhancement	major	resolved		2016-04-13	2017-10-03
#39: additional output from tarean - save more detailes from analysis	enhancement	major	resolved		2016-05-31	2017-10-03
#34: include information about merging setup in html output	enhancement	major	resolved		2016-05-02	2016-10-11
#51: add "how to cite" to Tarean output table	enhancement	critical	resolved		2016-08-22	2016-08-31
#41: add archive with results to output	enhancement	major	resolved		2016-06-01	2016-07-12
#44: modifie html output - include low confidence satellites in separate table	enhancement	major	resolved		2016-06-01	2016-07-12
#48: delete large files after job is finished	enhancement	major	resolved		2016-06-15	2016-06-21
#36: check version of ncbi blast 2.2.28 or higher	enhancement	minor	new		2016-05-08	2016-05-08
#20: optimize memory usage	enhancement	major	resolved		2016-03-21	2016-05-03
#35: in max_mem and cpu not set check envir variables befar setting to default	enhancement	major	resolved		2016-05-03	2016-05-03
#31: make merging of clusters based on pair mates optional	enhancement	major	resolved		2016-04-27	2016-05-02

#72: Is there a way to have TAREAN run k-mer analysis / logo generation on "other" hits

task

major

new

2022-03-25

#5: move adding new attributes to init in classes

task

major

resolved

Petr Novak

2016-01-05

#1: check if make was run

proposal

minor

resolved

2015-12-21

2016-03-16

#16: adjust range of kmer calculation

proposal

major

new

2016-02-09

#7: add option to set size of sample for input sequences

proposal

minor

resolved

2016-01-05

2016-01-18

#10: use config as singleton object to store global options

proposal

major

resolved

2016-01-05

2016-01-06

#9: make better locations of modules

proposal

minor

resolved

2016-01-05

2016-01-06

#68: To classify LTRs

enhancement

major

new

2021-05-27

#2: impove export_clusters_files_multiple in graph files

enhancement

major

resolved

2015-12-21

2017-11-14

#57: add vallidation of custom database

enhancement

major

new

2017-11-13

#19: improve prerun

enhancement

major

resolved

2016-03-02

2017-10-10

#12: skip loading packages if --help option is used

enhancement

minor

resolved

2016-01-14

2017-10-10

#55: round number in output html table report

enhancement

minor

resolved

2016-11-22

2017-10-03

#8: skip unnecessary computation in tarean mode

enhancement

minor

resolved

2016-01-05

2017-10-03

#26: add confindence categories for satellite prediction

enhancement

major

resolved

2016-04-13

2017-10-03

#39: additional output from tarean - save more detailes from analysis

enhancement

major

resolved

2016-05-31

2017-10-03

#34: include information about merging setup in html output

enhancement

major

resolved

2016-05-02

2016-10-11

#51: add "how to cite" to Tarean output table

enhancement

critical

resolved

2016-08-22

2016-08-31

#41: add archive with results to output

enhancement

major

resolved

2016-06-01

2016-07-12

#44: modifie html output - include low confidence satellites in separate table

enhancement

major

resolved

2016-06-01

2016-07-12

#48: delete large files after job is finished

enhancement

major

resolved

2016-06-15

2016-06-21

#36: check version of ncbi blast 2.2.28 or higher

enhancement

minor

new

2016-05-08

#20: optimize memory usage

enhancement

major

resolved

2016-03-21

2016-05-03

#35: in max_mem and cpu not set check envir variables befar setting to default

enhancement

major

resolved

2016-05-03

#31: make merging of clusters based on pair mates optional

enhancement

major

resolved

2016-04-27

2016-05-02

Issues

Issues (1–25 of 78)