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repex_tarean / RepeatExlorer2 and Tarean Manual

Step by step protocols were published in Nature Protocols

Free link to the full-text:

Four protocols are included:

  1. De novo repeat identiļ¬cation in a single species
  2. Comparative repeat analysis in a set of species
  3. Development of satellite DNA probes for cytogenetic experiments
  4. Identiļ¬cation of centromeric repeats based on ChIP-seq data