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CyToStruct — Cytoscape app for executing external applications in command or batch mode

Mainly targets programs for visualizing molecular structures (PyMOL, Jmol, Chimera, VMD etc.)

If you're using this plugin please cite: Nepomnyachiy, Sergey, Nir Ben-Tal, and Rachel Kolodny. "CyToStruct: augmenting the network visualization of cytoscape with the power of molecular viewers." Structure 23.5 (2015): 941-948.

Motivation and Overview