Home

#Result file#

The result file is an tab seperated file and can have two seperate formates. These can be called by setting the variable -p.

##Compact## Column definition:

• [#1:ID] comparison ID
• [#2:NameGroupA] Group A
• [#3:NameGroupB] Group B
• [#4:p.value] estimated p-value by binomial distribution
• [#5:FDR] corrected p-value used Benjamini-Hochberg.
• [#6:relationType] showing if it is a deletion or an enrichment
• [#7:PFC] mean link score between the groups

##Large## Column definition:

• [#1:ID] comparison ID
• [#2:NameGroupA] Group A
• [#3:NameGroupB] Group B
• [#4:p.value] estimated p-value by binomial distribution
• [#5:FDR] corrected p-value used Benjamini-Hochberg.
• [#6:relationType] showing if it is a deletion or an enrichment
• [#7:PFC] mean link score between the groups
• [#8:id.first] internal groupID
• [#9:id.second] internal groupID
• [#10:groupSize.first] amount of elements group A
• [#11:groupSize.second] amount of elements group B
• [#12:groupLinkDegree.first] number of outgoing links group A
• [#13:groupLinkDegree.second] number of outgoing links group B
• [#14:expectedLinks] approximated expected links between groups, by random sampling
• [#15:sharedOriglinks] links between groups in real network
• [#16:sharedRndlinks] links between groups observed through monte carlo sampling

#Pre processed network file#

First 8 rows contain valuable information about the model generation which is needed for further analysis. Each row in the main file represents a link in the random network model:

• [#1:NodeA] ID of node A
• [#2:NodeB] ID of node B
• [#3:Random Links] amount of links observed
• [#4:Real Links] connected in real network
• [#5:Link Weight] connection weight in real network