1. Simon Roux Avatar Simon Roux
  2. Host_Prediction_Integration
  3. iphop

Issues

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Issues (1–25 of 126)

Title T P Status Votes Assignee Created Updated Actions
#51: Can I achieve virus host prediction using only my own MAGs?
proposal major closed
#136: Failure in running test database
bug major closed
#35: OSError: SavedModel file does not exist
bug major on hold
#134: Multiple host
bug major closed
#132: Tensorflow error during Iphop bootup.
bug major closed
#129: how to make the IpHop host prediction more lenient by lowering the score requirements to 50.
task major closed
#128: taxonomic issue
proposal trivial closed
#124: How to get the host genomes? Can I just re-download it myself?
proposal major closed
#122: gtdbtk de_novo_wf is OK but gtdbtk classify_wf: error: one of the arguments --skip_ani_screen --mash_db is required
bug major closed
#120: can I get the results of other scores such as 80,85？
task major closed
#115: Issue in adding MAGs to database
bug major closed
#103: iphop_installation
bug major closed
#105: The blastn output file for the CRISPR spacers was empty
bug minor closed
#133: iPHoP predict command appears to hang
bug major closed
#130: Error with adding custom archaeal MAGs to iPHoP database.
bug major closed
#126: Database link error?
bug major closed
#33: AttributeError: module 'numpy' has no attribute 'float'.
bug major closed
#123: An error putatively related with TensorFlow version
bug major resolved
#47: Error with rafah : libnsl.so.1
bug major on hold
#41: FileNotFoundError: [Errno 2] No such file or directory: '**/Wdir/php_results/php_db_Prediction_Allhost.csv'
bug major closed
#119: Adding archaeal MAGs to the host database but no bacteria MAGs
bug major closed
#116: How to choose between Host_prediction_to_genus_m90.csv and Host_prediction_to_genome_m90.csv
enhancement major closed
#118: Whether splitting files impact the host prediction results?
bug major closed
#22: Error in adding MAGs to standard DB
bug major closed
#2: [UNEXPECTED ERROR] Error at the step 7 while loading all parse data
bug major resolved
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