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gbk / Sprint 1B - Initial spanning user stories for Mark2Cure KB access to SemMedDb

User Stories

  1. Show the relations associated with particular concept Input: CUI Output: Relation table
  2. Search concepts by text Input: text field (e.g. ‘seizures’) Output: List of matching concepts (with CUIs, Linked to task 1)
  3. Show the relations extracted from a particular abstract by SemmedDb Input: PMID Output: Relation table

View Mockups

Relation table: fields will be basically the same as are needed for the paid crowdsourcing verification tasks.

Minimal for Relation Table display

subject_text | predicate | object_text | sentence | pmid

epididymis | LOCATION_OF | obstruction | “The surgical treatment of sterility due to obstruction at the epididymis” |12255534

  • Will need CUIs for concept linking

  • Should work toward enhancing the display with (e.g. on hover) definitions for all the terms.

Updated