GetTagTaxaDistFromDBPlugin takes an existing GBSV2 SQLite database file as input and returns a tab-delimited file containing a list of tags and their taxa distribution as stored in the specified database file.
The parameters to this plugin are:
- -db <Input DB>: Full path to the GBSv2 SQLite database from which to pull the tag/taxa distribution information (REQUIRED)
- -o <Output File>: Full path to output file. This will be a tab-delimited text file that can be imported to Excel (REQUIRED)
A sample command line exception :
./run_pipeline.pl -fork1 GetTagTaxaDistFromDBPlugin -db /Users/micky/test/GBSv2.db -o /Users/micky/myResults/TagTaxaDistOutput.txt -endPlugin -runfork1