# ATLAS / Auxiliary Tools: readOverlap

## Overview

Paired-end sequenced reads may or may not overlap. This task assesses how many pairs have a given overlap.

• A BAM file

## Output

• A text file with suffix "_overlapStats.txt"

## Usage Example

./atlas task=readOverlap bam=example.bam


## Engine Parameters

Engine parameters that are common to all tasks can be found here. This task accepts the parameters specific to windows.

Updated