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Overview
Paired-end sequenced reads may or may not overlap. This task assesses how many pairs have a given overlap.
Input
- A BAM file
Output
- A text file with suffix "_overlapStats.txt"
Usage Example
./atlas task=readOverlap bam=example.bam
Engine Parameters
Engine parameters that are common to all tasks can be found here. This task accepts the parameters specific to windows.
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