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Issues (1–25 of 278)

Title T P Status Votes Assignee Version Created Updated Actions
#973: Why does bio3d no longer support EDDM and cannot download and install it despite trying various methods
bug major resolved
#970: Bhattacharyya coefficient calculations returning NAs
bug major open
#964: torsion.pdb calculates angles across different chains
bug major open
#966: PC vs Time plot
Q&A
bug minor closed
#969: In pdb2sse(pdb) : No helix and sheet defined in input 'sse' PDB object: try using dssp()
Q&A
bug critical open
#858: bug using pdbaln
bug major resolved
#955: "Overlap" function to calculate the similarity of two principal components
bug major new
#957: NMA issue
bug major new
#954: How to save DCCM plot generated by Bio3d in linux operating system as png format?
bug major duplicate
#921: blast.pdb does not return the PDBids of PDBs with identical sequences (so called "identical proteins" by NCBI) present in the PDB database.
Q&A
bug major new
#916: Sequence alignment of several structures
bug major new
#915: subscript out of bounds
bug major new
#917: I convert my pdb to charmm and get hydrogens removed
bug major new
#911: Get annotations from pdbs of hits error
bug major new
#910: Find PFAM annotations of PDB entries error
ToDo
bug major new
#909: how to merge more than two groups ?
bug major new
#904: install.packages("devtools") error
bug major new
#901: pdb2sse secondary structure is quite different to the DSSP4 result
bug minor new
#898: Not possible to read.pdb('1ao7.pdb2", multi = TRUE)
ToDo
bug major new
#894: Select atom section of pdb object from read.pdb
bug blocker new
#893: communities not colored on the struct and struct is not tube, VMD
bug major new
#884: How to obtain the typical PDB structure through the clustering diagram of bio3d
bug major closed 1
#710: Bio3D-web not working due to Shiny Server license expiration
ToDo
bug critical closed 1
#882: PCA for NMA
bug major new
#880: read.pdb ATOM required formatting
Q&A
bug major new
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