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Issues (76–100 of 384)

Title T P Status Votes Assignee Version Created Updated Actions
#358: How to get per residue rmsf for each frame in the trajectory?
Q&A
task minor resolved
#588: Using core.find on a specific set of residues or domain
task minor new
#580: How to print mean position (x,y,z) of each atom
Q&A
task minor new
#496: Same sequence PDBs with slightly altered structures give very different networks
task minor resolved
#501: Increasing contact map filter size doesn't reduce community size
task minor resolved
#517: Regarding RMSD/RMSF Plots and DCCM analysis
Q&A
task minor new
#500: how to plot the contribution of each residue in PCA histogram.
task minor resolved
#542: Problem reading multiframe PDB with read.pdb()
ToDo
task minor open
#569: Which ForceField parameters?
task minor resolved
#576: Question: Torsion PCA
Q&A
task minor resolved
#513: dcd file loading error
Q&A
task minor resolved
#571: Fluctuations plot
Q&A
task minor new
#547: compare displacement with dccm
Q&A
task minor resolved
Bio3D Project
#549: Loading part of dcd file
task minor resolved
Bio3D Project
#552: Muscle seqaln( ) in linux vs Windows?
task minor resolved
#557: RMSD_ERROR
Q&A
task minor resolved
#559: Ensemble PDB instead of .dcd for MD analysis ?
Q&A
task minor resolved
#561: aanma with rtb=TRUE still distorts residues
Q&A
task minor resolved
#562: why different values for fluct.nma(modes, mod.inds=c(7,total.no.of.modes)) and modes$fluctuations?
Q&A
task minor resolved
#538: How to specify whole protein structure in trajectory analysis?
Q&A
task minor resolved
#548: problem in visualizing results on pymol...
Q&A
task minor resolved
Bio3D Project
#544: omitting output lines in result
Q&A
task minor resolved
Bio3D Project
#535: Draw bonds pymol
task minor resolved
#528: error_ ensemble NMA
ToDo
task minor new
#527: pca of multichain protein
task minor resolved
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