Dear all, I am new in using miarma, so I apologize in advance if I'm unable to accurately express my issue. I'm trying the mRNA basic example using hisat2 index. I get the following error in Differential Expression module using EdgeR:

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miARma, miRNA and RNASeq Multiprocess Analysis

miARma v 1.7.2 (Dec-2017)

Created at Computational Biology and Bioinformatics Group (CbBio)

Institute of Biomedicine of Seville. IBIS (Spain)

Modified and Updated at Bioinformatics Unit at IPBLN-CSIC

Institue for Parasitology and Biomedicine Lopez-Neyra (IPBLN-CSIC).

Granada (Spain)

mail : miARma-devel@cbbio.es

[Thu Dec 28 12:22:22 2017] Starting a miARma analysis for mRNA [Thu Dec 28 12:22:22 2017] Checking provided parameters for: Quality,Aligner,ReadCount,DEAnalysis,FAnalysis,TargetPrediction. [Thu Dec 28 12:22:22 2017] Checking General-output_dir parameter ... Exists! [Thu Dec 28 12:22:22 2017] The folder specified in (output_dir=Examples/basic_examples/mRNAs/results/) already exists. [Thu Dec 28 12:22:22 2017] Wait 5 seconds to overwrite the folder. Cancel otherwise: 0 [Thu Dec 28 12:22:28 2017] Continue. [Thu Dec 28 12:22:28 2017] All parameters are correct. [Thu Dec 28 12:22:28 2017] Starting Quality Analysis. [Thu Dec 28 12:22:34 2017] Quality Analysis finished. [Thu Dec 28 12:22:34 2017] No processed files are found [neither cutadapt, nor reaper nor adaptrimming folders], assuming Examples/basic_examples/mRNAs/reads_test5/ are already processed [Thu Dec 28 12:22:34 2017] Starting a "Hisat2" Alignment Analysis [Thu Dec 28 12:25:48 2017] "Hisat2" Alignment Analysis finished [Thu Dec 28 12:25:48 2017] Starting a Readcount Analysis [Thu Dec 28 12:26:28 2017] Readcount Analysis finished. [Thu Dec 28 12:26:28 2017] Starting a differential expression analysis using EdgeR-Noiseq software(s) Problem while running this R command: print(resultsfiles)

Error: print(resultsfiles) : object 'resultsfiles' not found Execution halted

I have already read the Issue ~~#63~~ and all the R required packages are correctly installed. My R version is 3.4.3

Error in Differential Expression module using EdgeR