add MDS as an algorithm option under the PCA tool

Issue #12 closed
Thomas Gilgenast created an issue

the PCA tool currently covers many related dimensionality reduction algorithms under its umbrella - MDS sounds like it would fit right in with the rest of the family

Comments (1)

  1. Thomas Gilgenast reporter

    added mds option to pca

    accessible by passing variant='mds' to compute_pca()

    also accessible by passing -a mds to the lib5c pca tool

    required a refactor to expose a new function make_pairwise_correlation_matrix_from_counts_matrix() in lib5c.algorithms.correlation

    closes #12

    → <<cset 202a4aa753cc>>

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