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  2. 3DNETMOD
  3. lib5c

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Issues (1–22 of 22)

Title T P Status Votes Assignee Milestone Created Updated Actions
#51: ExtendableHeatmap should support plotting rectangular arrays
enhancement major new
#20: some Dataset.apply_*() functions don't work inplace
enhancement trivial new
#25: plotting API should support custom tick labels
enhancement minor resolved
#14: pca tool's -s/--separate_colors should be extracted as a re-usable helper
enhancement minor on hold
#8: expose expected model plotting as a command line tool
enhancement trivial on hold
#49: add option to plot only longest isoform
enhancement minor new
#60: lowess_fit() should allow extrapolation
enhancement minor resolved
#65: ExtendableHeatmap add_chipseq_track() should support color-coding each feature
enhancement minor new
#48: add support for fragment-level heatmap plotting in ExtendableHeatmap
enhancement minor new
#58: cluster outlining could be faster
enhancement minor new
#57: display of plotting output in tutorial notebooks is inconsistent
enhancement trivial closed
#28: would heatmap plotting be faster if we used PatchCollection?
enhancement minor closed
#35: expected modeling could be sped up
enhancement minor resolved
#26: plot_heatmap() should accept a track_names kwarg
enhancement minor closed
#33: qnorm algorithm could be faster
enhancement minor closed
#31: using a blank label with ExtendableHeatmap.add_chipseq_track() should be easier
enhancement minor resolved
#15: add distance dependence tool to toolkit
enhancement minor resolved
#12: add MDS as an algorithm option under the PCA tool
enhancement minor closed
#3: tutorials and conceptual docs need more pictures
enhancement minor resolved
#10: add pipeline task for qnorm
enhancement minor closed
#1: lazy imports in lib5c toolbox
enhancement minor resolved
#2: missing signatures in docs
enhancement minor resolved