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  2. 3DNETMOD
  3. lib5c

Issues

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Issues (1–25 of 28)

Title T P Status Votes Assignee Milestone Created Updated Actions
#6: refactor pipeline visualizations to be more modular
proposal trivial open
#55: plotting genomic features to the margins of an ExtendableHeatmap should share a common, reusable API
proposal major new
#79: extendable heatmap system axis modifications should be conisistent, documented, and reusably/compositionally customizable
proposal minor new
#80: simplify pipeline system
proposal trivial new
#54: add python3 support
proposal critical resolved
#75: provide functionality to get demo data from within python
proposal major resolved
#74: [docs] explain how to augment a primermap with GC content and length information
proposal trivial new
#72: rework files included in test folder
proposal major new
#67: docker build should not require any "prereq" steps like building the wheel on the host machine
proposal minor resolved
#19: improvements to Dataset.select()
proposal trivial new
#17: reduce boilerplate re-use in toolbox
proposal trivial on hold
#66: redesign CLI framework
proposal major new
#53: lib5c.util.optimization.array_newton() is redundant with latest scipy versions
proposal trivial on hold
#52: dependencies could be streamlined
proposal major new
#37: binning could be faster in certain cases
proposal minor new
#45: support lognormal model fed by exp(mu) instead of mean of unlogged counts
proposal trivial new
#4: use different names for the parallelized versions of functions
proposal trivial wontfix
#46: consider reworking gene track inclusion
proposal minor new
#47: consider adding a changelog
proposal minor closed
#34: could clustering use label() from scipy.ndimage instead of scikit-image?
proposal minor resolved
#41: rework replicate name inference
proposal minor closed
#29: can distribution overlay plotting be simplified by using sns.FacetGrid?
proposal minor new
#9: refactor plotters and writers to use check_outdir() consistently
proposal trivial closed
#22: standardize plot aesthetics
proposal minor closed
#21: refactor counts/pixelmap parser names and standardize usage
proposal major closed
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