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Issues

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Issues (26–50 of 52)

Title T P Status Votes Assignee Milestone Created Updated Actions
#48: Add saturation curves
enhancement major new
#37: Conversion to stringi
enhancement minor wontfix
#45: Gene usage and RDI vignette
enhancement minor resolved
#16: Add annotation collapse without duplicate removal to collapseDuplicates
enhancement minor resolved
#55: Add publication reference to Description field for v0.2.9
enhancement trivial resolved
#60: Allow non-uniform sampling in rarefyDiversity
enhancement minor resolved
#61: See if there is way to add dispatching to plotAbundance
enhancement minor resolved
#34: More diversity plots
enhancement minor resolved
#28: Add CDR3 and FRW4 to extractVRegion
enhancement minor wontfix
#53: Add clone count test to countGenes unit tests
enhancement minor resolved
#65: countGenes in Gene.R
enhancement minor resolved
#64: Make length mismatch warning more meaningful in makeChangeoClone
enhancement minor resolved
#69: Allow ungrouped data in rarefyDiversity and estimateAbundance
enhancement minor resolved
#72: Replace gridPlot with cowplot:plot_grid
enhancement minor new
#76: Document use of collapseDuplicates outside of makeChangeClone
enhancement major new
#71: Count genes once per clone, or count one gene per clone?
enhancement major resolved
#75: New diversity functions
enhancement major resolved
#73: Old tidyverse SE functions are deprecated
enhancement major resolved
#68: Added newick import/export
enhancement trivial resolved
#77: (Commit hash 948e415) CLONE fields in Diversity.R need to be hard-coded and simplified
enhancement minor closed
#88: Clarify file I/O documentation
enhancement minor resolved
#86: Execution halted for geneCounts() on c_call
enhancement minor resolved
#93: Have countClones handle NAs in clone_id
enhancement trivial resolved
#96: Use AIRR-ish names for output fields of calcJunctionAlignment
enhancement trivial resolved
#99: Calculate clonal frequencies
enhancement major resolved 1
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