kleinstein / alakazam / issues

Title	T	P	Status	Votes	Assignee	Milestone	Created	Updated
#99: Calculate clonal frequencies	enhancement	major	resolved	1			2022-02-04	2022-02-22
#96: Use AIRR-ish names for output fields of calcJunctionAlignment	enhancement	trivial	resolved		ssnn		2021-06-20	2021-09-15
#93: Have countClones handle NAs in clone_id	enhancement	trivial	resolved		Edel Aron		2020-12-07	2020-12-08
#88: Clarify file I/O documentation	enhancement	minor	resolved		Edel Aron		2020-09-03	2020-11-24
#86: Execution halted for geneCounts() on c_call	enhancement	minor	resolved		Edel Aron	next release	2020-09-03	2020-12-03
#75: New diversity functions	enhancement	major	resolved		Roy Jiang	next release	2019-05-22	2019-06-07
#73: Old tidyverse SE functions are deprecated	enhancement	major	resolved		ssnn	next release	2019-05-08	2019-06-12
#71: Count genes once per clone, or count one gene per clone?	enhancement	major	resolved		ssnn	next release	2019-02-13	2019-06-03
#69: Allow ungrouped data in rarefyDiversity and estimateAbundance	enhancement	minor	resolved		Jason Vander Heiden		2018-09-03	2018-09-06
#68: Added newick import/export	enhancement	trivial	resolved		Kenneth Hoehn	next release	2018-08-29	2019-06-12
#65: countGenes in Gene.R	enhancement	minor	resolved		Roy Jiang		2018-07-26	2018-08-27
#64: Make length mismatch warning more meaningful in makeChangeoClone	enhancement	minor	resolved		Jason Vander Heiden		2018-07-26	2018-08-27
#61: See if there is way to add dispatching to plotAbundance	enhancement	minor	resolved		Jason Vander Heiden		2018-02-26	2018-03-14
#60: Allow non-uniform sampling in rarefyDiversity	enhancement	minor	resolved		Hailong Meng		2018-02-02	2018-02-02
#55: Add publication reference to Description field for v0.2.9	enhancement	trivial	resolved		Jason Vander Heiden		2017-09-21	2017-11-15
#53: Add clone count test to countGenes unit tests	enhancement	minor	resolved		Jason Vander Heiden		2017-05-31	2018-03-15
#45: Gene usage and RDI vignette	enhancement	minor	resolved				2016-07-17	2017-05-31
#43: Add clone subsetting to countGenes	enhancement	minor	resolved		Jason Vander Heiden		2016-07-08	2016-07-11
#39: Consider having readChangeoDb wrap fread() instead of read.table()	enhancement	minor	resolved		Jason Vander Heiden		2016-03-03	2016-04-13
#38: Add tigger gene ordering function	enhancement	minor	resolved		Jason Vander Heiden		2016-02-26	2016-07-12
#34: More diversity plots	enhancement	minor	resolved		Jason Vander Heiden		2016-01-26	2018-03-14
#31: R CMD Check warning	enhancement	minor	resolved		Jason Vander Heiden		2015-12-18	2016-01-22
#30: For aminoAcidProperties and related fx: test NAs	enhancement	major	resolved		ssnn		2015-12-18	2016-02-08
#27: countPattern should take a vector	enhancement	major	resolved		ssnn		2015-12-09	2015-12-10
#26: translateDNA should take a vector	enhancement	major	resolved		ssnn		2015-12-09	2015-12-10

#99: Calculate clonal frequencies

enhancement

major

resolved

1

2022-02-04

2022-02-22

#96: Use AIRR-ish names for output fields of calcJunctionAlignment

enhancement

trivial

resolved

ssnn

2021-06-20

2021-09-15

#93: Have countClones handle NAs in clone_id

enhancement

trivial

resolved

Edel Aron

2020-12-07

2020-12-08

#88: Clarify file I/O documentation

enhancement

minor

resolved

Edel Aron

2020-09-03

2020-11-24

#86: Execution halted for geneCounts() on c_call

enhancement

minor

resolved

Edel Aron

next release

2020-09-03

2020-12-03

#75: New diversity functions

enhancement

major

resolved

Roy Jiang

next release

2019-05-22

2019-06-07

#73: Old tidyverse SE functions are deprecated

enhancement

major

resolved

ssnn

next release

2019-05-08

2019-06-12

#71: Count genes once per clone, or count one gene per clone?

enhancement

major

resolved

ssnn

next release

2019-02-13

2019-06-03

#69: Allow ungrouped data in rarefyDiversity and estimateAbundance

enhancement

minor

resolved

Jason Vander Heiden

2018-09-03

2018-09-06

#68: Added newick import/export

enhancement

trivial

resolved

Kenneth Hoehn

next release

2018-08-29

2019-06-12

#65: countGenes in Gene.R

enhancement

minor

resolved

Roy Jiang

2018-07-26

2018-08-27

#64: Make length mismatch warning more meaningful in makeChangeoClone

enhancement

minor

resolved

Jason Vander Heiden

2018-07-26

2018-08-27

#61: See if there is way to add dispatching to plotAbundance

enhancement

minor

resolved

Jason Vander Heiden

2018-02-26

2018-03-14

#60: Allow non-uniform sampling in rarefyDiversity

enhancement

minor

resolved

Hailong Meng

2018-02-02

#55: Add publication reference to Description field for v0.2.9

enhancement

trivial

resolved

Jason Vander Heiden

2017-09-21

2017-11-15

#53: Add clone count test to countGenes unit tests

enhancement

minor

resolved

Jason Vander Heiden

2017-05-31

2018-03-15

#45: Gene usage and RDI vignette

enhancement

minor

resolved

2016-07-17

2017-05-31

#43: Add clone subsetting to countGenes

enhancement

minor

resolved

Jason Vander Heiden

2016-07-08

2016-07-11

#39: Consider having readChangeoDb wrap fread() instead of read.table()

enhancement

minor

resolved

Jason Vander Heiden

2016-03-03

2016-04-13

#38: Add tigger gene ordering function

enhancement

minor

resolved

Jason Vander Heiden

2016-02-26

2016-07-12

#34: More diversity plots

enhancement

minor

resolved

Jason Vander Heiden

2016-01-26

2018-03-14

#31: R CMD Check warning

enhancement

minor

resolved

Jason Vander Heiden

2015-12-18

2016-01-22

#30: For aminoAcidProperties and related fx: test NAs

enhancement

major

resolved

ssnn

2015-12-18

2016-02-08

#27: countPattern should take a vector

enhancement

major

resolved

ssnn

2015-12-09

2015-12-10

#26: translateDNA should take a vector

enhancement

major

resolved

ssnn

2015-12-09

2015-12-10

Issues

Issues (1–25 of 40)