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  3. alakazam

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Issues (51–75 of 108)

Title T P Status Votes Assignee Milestone Created Updated Actions
#49: calcBaseline and calcBaselineHelper : testStatistic arg for imbalanced wrong
bug minor resolved
#38: Add tigger gene ordering function
enhancement minor resolved
#43: Add clone subsetting to countGenes
enhancement minor resolved
#42: getSeqMatrix vs getDistanceMatrix
enhancement minor invalid
#39: Consider having readChangeoDb wrap fread() instead of read.table()
enhancement minor resolved
#21: Add evenness to diversity output
enhancement minor resolved
#31: R CMD Check warning
enhancement minor resolved
#17: Move amino acid analysis from repertoire into main alakazam package
enhancement minor resolved
#24: R CMD Check gravy warning
enhancement minor resolved
#13: Cannot knit lineage vignette pdf
bug minor resolved
#23: R CMD Check igraph warning
enhancement minor resolved
#20: Parallelize diversity and abundance calculations
enhancement minor new
#9: Outstanding `R CMD check` warnings
bug minor resolved
#7: Add cross-sample distToNearest mode
enhancement minor invalid
#4: readChangeoDb should probably convert all columns to character type
enhancement minor resolved
#8: Remove globals for default colors
enhancement minor resolved
#5: collapseDuplicates could use binary distance instead for speed
enhancement minor resolved
#108: Using multiple columns as groups in alphaDiversity
enhancement major open
#107: Missing gene usage values for genes with "D" in the name
proposal major closed
#106: change groupGenes only_heavy default from T to F
bug major new
#104: readChangeoDb convert the sequence_id column into double, probably when ID start by a digit
bug major resolved
#102: update estimateAbundance, plotAbundanceCurve to work with mixed data
enhancement major new
#101: Error running estimateAbundance
bug major resolved
#100: Clonal diversity
bug major resolved
#99: Calculate clonal frequencies
enhancement major resolved 1
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