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  3. alakazam

Issues

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Issues (76–100 of 108)

Title T P Status Votes Assignee Milestone Created Updated Actions
#17: Move amino acid analysis from repertoire into main alakazam package
enhancement minor resolved
#26: translateDNA should take a vector
enhancement major resolved
#27: countPattern should take a vector
enhancement major resolved
#14: Updated package to use dplyr
enhancement major resolved
#24: R CMD Check gravy warning
enhancement minor resolved
#18: Rescale getBaseTheme for publication sizes
enhancement trivial resolved
#25: Add coverage curves
enhancement major new
#23: R CMD Check igraph warning
enhancement minor resolved
#20: Parallelize diversity and abundance calculations
enhancement minor new
#12: Add amino acid properties functions
enhancement major resolved
#10: Add R citation
enhancement trivial resolved
#7: Add cross-sample distToNearest mode
enhancement minor invalid
#4: readChangeoDb should probably convert all columns to character type
enhancement minor resolved
#8: Remove globals for default colors
enhancement minor resolved
#6: Move distToNearest to SHM package
enhancement trivial resolved
#1: distToNearest return object might be better as a vector
enhancement trivial resolved
#5: collapseDuplicates could use binary distance instead for speed
enhancement minor resolved
#107: Missing gene usage values for genes with "D" in the name
proposal major closed
#92: Add readAIRR() and update readChangeoDb(). They should accept a vector of files and check uniqueness
proposal minor new 1
#84: Help understanding diversity tests at a fixed diversity order
proposal major resolved
#33: getGene returns first not Not Localized results
proposal minor resolved
#59: Add an option to aminoAcidProperties to use region definitions
proposal minor wontfix
#57: readChangeoDb reads a list of files in parallel
proposal minor invalid
#58: add `fields` to writeChangeoDb to split a db file into multiple files
proposal minor invalid
#50: getSegment automatically strips D from names
proposal minor invalid
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