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Dependencies, Compilation, Install

Supported architectures

• i386
• x86_64

Supported compilers

• gcc (GCC) 4.8.2 20140120 (Red Hat 4.8.2-15)
• Apple LLVM version 9.1.0 (clang-902.0.39.1)
• clang version 5.0.1 (tags/RELEASE_501/final)
• icpc (ICC) 18.0.2 20180210

More infos here

You can try to compile the project with other compilers or compilers' versions, however you are completely on your own.

Supported linkers

• ld64-351.8 provieded with Apple LLVM version 9.1.0 (clang-902.0.39.1)

You can try to compile the project with other dynamic linkers or dynamic linkers' versions, however you are completely on your own.

Libraries (dependencies)

miniJATI depends on the following libraries

• Bio++/bpp-core 2.4.0
• Bio++/bpp-seq 2.4.0
• Bio++/bpp-phyl 2.4.0
• glog - Google Logging Library
• boost - C++ Libraries
• TSHLib - Tree Search Heuristics Library 2.0.0
• Intel TBB - 2018 10005 (open source)

How to compile

• [1] Preparing your system

• [2.0] Compiling on your local machine

• [2.1] Compiling on a shared machine (i.e. cluster)
• [2.2] Compiling on AWS
• [2.3] Compiling in a docker image

How to update

Update castor following this how-to