Phyloviz not working with AdoptOpenJDK 11

[Louis Lignereux]

Hello,

Since JAVA is no longer accessible for free, I am trying to make Phyloviz work with the JAVA alternative AdoptOpenJDK 11 on macOS11.1.

So far I am getting the following message in the terminal:

“The operation couldn’t be completed. Unable to locate a Java Runtime that supports (null).
Please visit http://www.java.com for information on installing Java.

Cannot find java. Please use the --jdkhome switch.
logout
Saving session...
...copying shared history...
...saving history...truncating history files...
...completed.

[Process completed]”

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I hope you can help,

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Thank you very much,

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Louis

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[Bitbucket user]

Hi,

I just tried with OpenJDK 11 in Debian and it seems to be working as expected. Can you provide the output of java command while running

java -version

at the command line?

Thanks.

[Bitbucket user]

Hi,

Please check also discussion related with issue #14.

Thanks.

[Louis Lignereux]

Hello,

I have tried with OpenJDK 15 as well with no success:

openjdk version "15.0.2" 2021-01-19
OpenJDK Runtime Environment AdoptOpenJDK (build 15.0.2+7)
OpenJDK 64-Bit Server VM AdoptOpenJDK (build 15.0.2+7, mixed mode, sharing)

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Cheers,

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Louis

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[Louis Lignereux]

The fix was found:

in phyloviz/etc/phyloviz.conf, the path to java was modified to:

default location of JDK/JRE, can be overridden by using --jdkhome <dir> switch
jdkhome="/Library/Java/JavaVirtualMachines/adoptopenjdk-8.jdk/Contents/Home"

Phyloviz now opens.

However, I have a new issue now: I am getting the following message:

“libjnidispatch-440.jnilib” cannot be opened because the developer cannot be verified”

And after computing the dataset, the trees don’t appear ;(

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[Louis Lignereux]

with the modified path, it now works a charm.