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Issues (1–25 of 28)

Title T P Status Votes Assignee Version Created Updated Actions
#891: How to modify B-factor column of a PDB file with Bio3D?
Q&A
enhancement minor new
#889: How to calculate distance matrix between two chain in a single PDB file?
Q&A
proposal minor resolved
#853: How to extract part of protein complex with two molecules with Bio3D
Q&A
enhancement minor resolved
#726: Option to include key for RMSIP matrix heatmap
Q&A
enhancement minor new
#729: muscle alignment
Q&A
task minor new
#543: Suboptimal path calculation question
Q&A
bug minor resolved
#681: correlation analysis
Q&A
task minor closed
#643: Error in dssp.pdb(pdb) - unhelpful error message
Q&A
proposal minor closed
#659: Plot values of principal components (instead proportion of variance)
Q&A
task minor resolved
#660: Unit of the eigenvalues of the PCA
Q&A
task minor resolved
#677: PCA trajectory analysis
Q&A
task minor resolved
#680: PCA for crystal structure and MD simulation
Q&A
task minor resolved
#687: dimension mismatch
Q&A
task minor resolved
#602: Plot RMSF in b factor column
Q&A
task minor resolved
#640: filter.dccm() clarification
Q&A
bug minor resolved
#648: Error in cij.network[cij.network > 0]
Q&A
bug minor resolved
#651: Wild PDB files has multiple HEADER records
Q&A
enhancement minor new
#612: contact map filter by residue number
Q&A
task minor resolved
#626: Non zero exit status of packages while installing bio3d
Q&A
task minor resolved
#600: NMA on self-curated pdb files
Q&A
task minor resolved
#610: How to store only first mode result in aanma.pdbs()/nma.pdbs()?
Q&A
task minor resolved
#587: Generating protein motion movie from aanma or nma?
Q&A
task minor new
#557: RMSD_ERROR
Q&A
task minor resolved
#561: aanma with rtb=TRUE still distorts residues
Q&A
task minor resolved
#562: why different values for fluct.nma(modes, mod.inds=c(7,total.no.of.modes)) and modes$fluctuations?
Q&A
task minor resolved
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