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Issues (1–25 of 43)

Title T P Status Votes Assignee Version Created Updated Actions
#885: Simple clustering in PC subspace-How to obtain the typical PDB structure through the clustering diagram of bio3d
task major new 1
#826: How to calculate RMSD and binding energy from the already docked ligand-receptor
Q&A
task minor resolved
#817: PCA/NMA differences
Q&A
task minor new
#787: fail to run "read.pdb"
Q&A
task minor closed
#641: Reading multiple pdb files
Q&A
bug major resolved
#630: Error in loading dcd file: shows much higher NATOMS than the actual: can not allocate memory
Q&A
bug major resolved 1
#604: atom_selection with segid?
Q&A
proposal minor resolved
#603: Is it possible to save ".dat" before plotting?
Q&A
enhancement minor resolved
#526: Can Bio3d analyse dimers ?
Q&A
task major resolved
Bio3D Project
#519: Enlarging the graphical output of ensemble NMA calculations
Q&A
task major resolved
Bio3D Project
#472: DCCM PLOT from GROMACS MD Trajectory
Q&A
enhancement major resolved
#471: DCCM PLOT from GROMACS MD Trajectory
ToDo
bug major resolved
#430: Issue in Muscle Alignment using Windows 8?
Q&A
task trivial resolved
Bio3D Project
#391: Dynamic cross-correlation map (DCCM)
Q&A
task major resolved
#390: Ionisation state of protein residues
Q&A
task trivial resolved
#388: DCCM (dccm.xyz.R and cov2dccm.R) - Mean substraction
Q&A
task minor resolved
#386: Best tool to compare sidechains effects
Q&A
task trivial resolved
#383: Altering radius argument in view.dccm() function.
Q&A
enhancement critical resolved
Bio3D Project
#375: PCA eigenvectors
Q&A
task major resolved
Bio3D Project
#369: How to decide on scut value in cmap function?
Q&A
task major resolved
Bio3D Project
#362: Can be extracted the conformer list for any PC?
Q&A
task minor resolved
#361: Custom annotation
Q&A
task trivial resolved
#351: disrepancy between dccm values
Q&A
bug major resolved
#341: could not interpret terms "node centrality", "betweenness centrality" "suboptimal paths"
Q&A
task trivial resolved
#299: Mass-weighted PCA analysis – problem with output trajectory
Q&A
task minor resolved
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