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Issues (1–25 of 43)

Title T P Status Votes Assignee Version Created Updated Actions
#383: Altering radius argument in view.dccm() function.
Q&A
enhancement critical resolved
Bio3D Project
#268: How can I filter residue cross correlation plots in bio3d?
Q&A
task critical resolved
Bio3D Project
#885: Simple clustering in PC subspace-How to obtain the typical PDB structure through the clustering diagram of bio3d
task major new 1
#641: Reading multiple pdb files
Q&A
bug major resolved
#630: Error in loading dcd file: shows much higher NATOMS than the actual: can not allocate memory
Q&A
bug major resolved 1
#519: Enlarging the graphical output of ensemble NMA calculations
Q&A
task major resolved
Bio3D Project
#526: Can Bio3d analyse dimers ?
Q&A
task major resolved
Bio3D Project
#472: DCCM PLOT from GROMACS MD Trajectory
Q&A
enhancement major resolved
#471: DCCM PLOT from GROMACS MD Trajectory
ToDo
bug major resolved
#375: PCA eigenvectors
Q&A
task major resolved
Bio3D Project
#391: Dynamic cross-correlation map (DCCM)
Q&A
task major resolved
#369: How to decide on scut value in cmap function?
Q&A
task major resolved
Bio3D Project
#351: disrepancy between dccm values
Q&A
bug major resolved
#261: PCA: mktrj.pca produces identical output for p1, p2, etc
bug major resolved
#826: How to calculate RMSD and binding energy from the already docked ligand-receptor
Q&A
task minor resolved
#817: PCA/NMA differences
Q&A
task minor new
#787: fail to run "read.pdb"
Q&A
task minor closed
#603: Is it possible to save ".dat" before plotting?
Q&A
enhancement minor resolved
#604: atom_selection with segid?
Q&A
proposal minor resolved
#388: DCCM (dccm.xyz.R and cov2dccm.R) - Mean substraction
Q&A
task minor resolved
#243: Problem when loading NetCDF trajectories
Q&A
bug minor resolved
#362: Can be extracted the conformer list for any PC?
Q&A
task minor resolved
#299: Mass-weighted PCA analysis – problem with output trajectory
Q&A
task minor resolved
#251: How is core.find different from sieve fit method
Q&A
task minor resolved
#282: Distance matrix using center of mass
task minor resolved
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