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Issues (26–50 of 125)

Title T P Status Votes Assignee Version Created Updated Actions
#689: plot.dccm and network analysis
Q&A
task trivial resolved
#643: Error in dssp.pdb(pdb) - unhelpful error message
Q&A
proposal minor closed
#658: struct.aln method does not fully align
enhancement minor resolved
#659: Plot values of principal components (instead proportion of variance)
Q&A
task minor resolved
#660: Unit of the eigenvalues of the PCA
Q&A
task minor resolved
#667: Phi/Psi error?
Q&A
task major closed
#672: How to read large dcd files; change X-axis to Time (ns); plot secondary structure throughout simulation; plot free energy landscape?
Q&A
task critical new
#677: PCA trajectory analysis
Q&A
task minor resolved
#680: PCA for crystal structure and MD simulation
Q&A
task minor resolved
#687: dimension mismatch
Q&A
task minor resolved
#685: Time consuming network analysis
Q&A
task trivial resolved
#683: old version of aaindex? missing some features
ToDo
task minor new
#670: torsion.pdb with proline
Q&A
bug major resolved
#673: mass weighting could not be grouped by residues
Q&A
bug major resolved
#686: queation about running the R script in parallel mode
Q&A
task major resolved
#524: hmmer() error and blast.pdb() warning
ToDo
bug major resolved
#679: Different results of PCA from Bio3d and gromacs
Q&A
bug major resolved
#676: failure to find temporary file when using stride()
bug minor closed
#666: Error with read.pdb
bug major resolved
#602: Plot RMSF in b factor column
Q&A
task minor resolved
#640: filter.dccm() clarification
Q&A
bug minor resolved
#648: Error in cij.network[cij.network > 0]
Q&A
bug minor resolved
#611: Error while trying to run Ensemble All-Atom NMA for more than 8 structures
Q&A
bug major resolved
#651: Wild PDB files has multiple HEADER records
Q&A
enhancement minor new
#642: blast.pdb() limit?
ToDo
enhancement major new
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