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Issues (1–25 of 73)

Title T P Status Votes Assignee Version Created Updated Actions
#920: How to implement elbow method for clustering to find the optimal K and how to generate a sorted table of eigenvalues with eigenvectors?
Q&A
task major new
#876: Is it possible to calculate RoG from a MD trajectory file?
Q&A
task major resolved
#903: Plotting PCA in 3d
Q&A
task minor new
#883: help with using distance matrix calculation.
Q&A
task critical new
#718: vmd.cna error
ToDo
task major new
#886: Importing DCCM and plotting
Q&A
task major new
#877: Not issue, but rather a request for information
Q&A
task minor new
#872: Torsion angle calculations for multi-model PDB file
Q&A
task minor new
#856: Analyzing Cellulose strictures using Bio3d
Q&A
task minor new
#846: pca clustering
Q&A
task trivial resolved
#863: Calculating Center of Mass of a protein and the corressponding displacement over the entire MD trajectory
Q&A
task major resolved
#768: Calculation of 'significantly' stronger correlation couplings in CNA
Q&A
task major closed
#806: Reverse color palette
Q&A
task minor resolved
#785: Large cif to pdb conversion
Q&A
task trivial new
#773: aanma on selected model from NMR ensemble
task major duplicate
#774: Attempt2: aanma on selected model from NMR ensemble
task major new
#764: Working with Thioester bond
Q&A
task minor new 1
#766: custom color in PCA analysis
Q&A
task trivial new
#721: angle.xyz not finding all main-chain angles
task trivial new
#724: PCA from nolecular dynamics and structure comparison
task major new
#708: write PC1 data into csv format prior to export and analysed by external software
Q&A
task major new
#652: Error in cmdscale(dist(cent), k = k) : NA values not allowed in 'd' for a system with a non-bonded cofactor
Q&A
task minor resolved
#581: Typo in the tutorial webpage
ToDo
task minor new
#568: All-atom NMA algorithm and scoring function?
Q&A
task major resolved
#570: Score calculations normal modes (SIP,RMSIP)
Q&A
task major resolved
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