chicagoTeam / Chicago / issues

Title	T	P	Status	Assignee	Created	Updated
#5: runChicago.R is not able to parse input parameters	bug	major	resolved	chicagoTeam	2016-01-18	2016-01-18
#4: .chinput does not show actual distance?	bug	major	resolved	chicagoTeam	2016-01-15	2016-04-01
#2: Error in get(binCol) : invalid first argument	bug	critical	resolved	chicagoTeam	2015-11-10	2016-04-01
#1: Error in vecseq when running estimateTechnicalNoise	bug	blocker	resolved		2015-07-19	2016-06-16
#6: Calculating p-values [update in Delaporte package breaks compatibility]	bug	blocker	resolved	chicagoTeam	2016-06-16	2016-08-22
#3: Different problems running replicates	bug	major	resolved	chicagoTeam	2015-11-14	2016-08-23
#8: Error in normaliseOtherEnds when combining multiple datsets	bug	major	resolved	chicagoTeam	2016-11-10	2016-12-05
#7: ./bam2chicago.sh errors	bug	major	resolved	chicagoTeam	2016-09-13	2017-04-11
#12: correct workflow for weight recalibration	task	major	resolved	chicagoTeam	2017-05-26	2017-09-20
#10: Differing numbers of interactions reported in seqmonk and washU output files	bug	major	resolved	chicagoTeam	2017-01-25	2017-09-20
#11: Altering rmap files in specific genomic regions	task	major	resolved		2017-02-11	2017-09-20
#13: Minimum spacing between viewpoints?	task	major	resolved	chicagoTeam	2017-08-01	2017-09-20
#14: bam2chicago bedtools error	task	major	resolved		2017-08-09	2017-09-20
#18: en_full_cis_range and en-trans	task	major	resolved		2017-09-21	2017-09-21
#21: Error while running readAndMerge()	bug	major	resolved	chicagoTeam	2017-10-27	2017-11-06
#28: BAM2chicago awk error	bug	major	resolved		2018-04-25	2018-04-25
#29: Bam2chicago: no such file or directory	bug	major	resolved		2018-04-26	2018-05-02
#27: Not able to generate .baitmap files using create_baitmap_rmap.pl	task	minor	resolved		2018-01-21	2018-05-10
#25: Reads filtered from chinput file?	bug	major	resolved	chicagoTeam	2017-12-14	2018-05-10
#17: runChicago.R	task	major	resolved		2017-09-20	2018-05-10
#20: Error: cannot allocate vector of size ...	bug	blocker	resolved	chicagoTeam	2017-10-09	2018-05-10
#24: Intersecting interactions from replicates	task	major	resolved	chicagoTeam	2017-12-14	2018-05-10
#30: makeDesignFiles.py	bug	major	resolved		2018-05-09	2018-05-10
#31: advice for assessing concordance between primary capture and reciprocal capture results	task	major	resolved		2018-05-13	2018-05-13
#36: Can I change the threshold?	task	major	resolved		2018-11-07	2018-11-08

#5: runChicago.R is not able to parse input parameters

bug

major

resolved

chicagoTeam

2016-01-18

#4: .chinput does not show actual distance?

bug

major

resolved

chicagoTeam

2016-01-15

2016-04-01

#2: Error in get(binCol) : invalid first argument

bug

critical

resolved

chicagoTeam

2015-11-10

2016-04-01

#1: Error in vecseq when running estimateTechnicalNoise

bug

blocker

resolved

2015-07-19

2016-06-16

#6: Calculating p-values [update in Delaporte package breaks compatibility]

bug

blocker

resolved

chicagoTeam

2016-06-16

2016-08-22

#3: Different problems running replicates

bug

major

resolved

chicagoTeam

2015-11-14

2016-08-23

#8: Error in normaliseOtherEnds when combining multiple datsets

bug

major

resolved

chicagoTeam

2016-11-10

2016-12-05

#7: ./bam2chicago.sh errors

bug

major

resolved

chicagoTeam

2016-09-13

2017-04-11

#12: correct workflow for weight recalibration

task

major

resolved

chicagoTeam

2017-05-26

2017-09-20

#10: Differing numbers of interactions reported in seqmonk and washU output files

bug

major

resolved

chicagoTeam

2017-01-25

2017-09-20

#11: Altering rmap files in specific genomic regions

task

major

resolved

2017-02-11

2017-09-20

#13: Minimum spacing between viewpoints?

task

major

resolved

chicagoTeam

2017-08-01

2017-09-20

#14: bam2chicago bedtools error

task

major

resolved

2017-08-09

2017-09-20

#18: en_full_cis_range and en-trans

task

major

resolved

2017-09-21

#21: Error while running readAndMerge()

bug

major

resolved

chicagoTeam

2017-10-27

2017-11-06

#28: BAM2chicago awk error

bug

major

resolved

2018-04-25

#29: Bam2chicago: no such file or directory

bug

major

resolved

2018-04-26

2018-05-02

#27: Not able to generate .baitmap files using create_baitmap_rmap.pl

task

minor

resolved

2018-01-21

2018-05-10

#25: Reads filtered from chinput file?

bug

major

resolved

chicagoTeam

2017-12-14

2018-05-10

#17: runChicago.R

task

major

resolved

2017-09-20

2018-05-10

#20: Error: cannot allocate vector of size ...

bug

blocker

resolved

chicagoTeam

2017-10-09

2018-05-10

#24: Intersecting interactions from replicates

task

major

resolved

chicagoTeam

2017-12-14

2018-05-10

#30: makeDesignFiles.py

bug

major

resolved

2018-05-09

2018-05-10

#31: advice for assessing concordance between primary capture and reciprocal capture results

task

major

resolved

2018-05-13

#36: Can I change the threshold?

task

major

resolved

2018-11-07

2018-11-08

Issues

Issues (1–25 of 32)