The loci query method

Refer to interactive documentation : http://enterobase.warwick.ac.uk/api/v2.0/swagger-ui#!/Loci

The loci query method shows metadata for loci for genotyping schemes. This includes links allowing download of the allele sequences for the loci (in gzipped FASTA files).

An example of this type of query to try in the interactive documentation which is also on the page about downloading schemes has "database" set to "senterica", "scheme" set to "MLST_Achtman" (as a parameter and in the path) and "limit" set to "50". This corresponds to an HTTP request to the URL:

http://enterobase.warwick.ac.uk/api/v2.0/senterica/MLST_Achtman/loci?limit=50&scheme=MLST_Achtman

This gives the result:

{
  "links": {
    "paging": {},
    "records": 7,
    "total_records": 7
  },
  "loci": [
    {
      "database": "Salmonella",
      "download_alleles_link": "http://enterobase.warwick.ac.uk/download_data?allele=aroC&scheme=UoW&species=Salmonella",
      "locus": "aroC",
      "locus_barcode": "SAL_AA0001AA_LO",
      "scheme": "UoW"
    },
    {
      "database": "Salmonella",
      "download_alleles_link": "http://enterobase.warwick.ac.uk/download_data?allele=dnaN&scheme=UoW&species=Salmonella",
      "locus": "dnaN",
      "locus_barcode": "SAL_AA0002AA_LO",
      "scheme": "UoW"
    },
    {
      "database": "Salmonella",
      "download_alleles_link": "http://enterobase.warwick.ac.uk/download_data?allele=hemD&scheme=UoW&species=Salmonella",
      "locus": "hemD",
      "locus_barcode": "SAL_AA0003AA_LO",
      "scheme": "UoW"
    },
    {
      "database": "Salmonella",
      "download_alleles_link": "http://enterobase.warwick.ac.uk/download_data?allele=hisD&scheme=UoW&species=Salmonella",
      "locus": "hisD",
      "locus_barcode": "SAL_AA0004AA_LO",
      "scheme": "UoW"
    },
    {
      "database": "Salmonella",
      "download_alleles_link": "http://enterobase.warwick.ac.uk/download_data?allele=purE&scheme=UoW&species=Salmonella",
      "locus": "purE",
      "locus_barcode": "SAL_AA0005AA_LO",
      "scheme": "UoW"
    },
    {
      "database": "Salmonella",
      "download_alleles_link": "http://enterobase.warwick.ac.uk/download_data?allele=sucA&scheme=UoW&species=Salmonella",
      "locus": "sucA",
      "locus_barcode": "SAL_AA0006AA_LO",
      "scheme": "UoW"
    },
    {
      "database": "Salmonella",
      "download_alleles_link": "http://enterobase.warwick.ac.uk/download_data?allele=thrA&scheme=UoW&species=Salmonella",
      "locus": "thrA",
      "locus_barcode": "SAL_AA0007AA_LO",
      "scheme": "UoW"
    }
  ]
}

Wiki

enterobase-web / api_loci

The loci query method