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  3. alakazam

Issues

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Issues (26–50 of 108)

Title T P Status Votes Assignee Milestone Created Updated Actions
#51: readChangeoDb failed in sbatch mode on Farnam
bug minor resolved
#52: seqDist crashes on Mac
bug major resolved
#46: Reduce example run times
bug major wontfix
#49: calcBaseline and calcBaselineHelper : testStatistic arg for imbalanced wrong
bug minor resolved
#44: countGenes. Error when using the clone argument with data from the older ExampleDb.gz
bug major resolved
#40: Example column names
bug major resolved
#36: Won't build on R < 3.2.0
bug major resolved
#35: Changes required for CRAN resubmission
bug major resolved
#32: R CMD check NOTES:
bug major resolved
#22: Gravy error from R CMD Check
bug major resolved
#13: Cannot knit lineage vignette pdf
bug minor resolved
#15: Add support for "TRGVA*01" allele
bug trivial resolved
#9: Outstanding `R CMD check` warnings
bug minor resolved
#3: testDiversity generates one-sided p-values and it should be two-sided
bug major resolved
#2: distToNearest model names differ from Change-O names
bug trivial resolved
#108: Using multiple columns as groups in alphaDiversity
enhancement major open
#102: update estimateAbundance, plotAbundanceCurve to work with mixed data
enhancement major new
#99: Calculate clonal frequencies
enhancement major resolved 1
#96: Use AIRR-ish names for output fields of calcJunctionAlignment
enhancement trivial resolved
#93: Have countClones handle NAs in clone_id
enhancement trivial resolved
#86: Execution halted for geneCounts() on c_call
enhancement minor resolved
#88: Clarify file I/O documentation
enhancement minor resolved
#77: (Commit hash 948e415) CLONE fields in Diversity.R need to be hard-coded and simplified
enhancement minor closed
#68: Added newick import/export
enhancement trivial resolved
#73: Old tidyverse SE functions are deprecated
enhancement major resolved
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