kleinstein / changeo / issues

Title	T	P	Status	Votes	Assignee	Milestone	Created	Updated
#197: Update IgBLAST example to include c_call	task	major	new		ssnn		2023-07-17	2023-11-06
#160: Verify all argument defaults are now AIRR column names	task	major	resolved			immcantation 4.0.0	2020-04-23	2020-04-30
#161: Verify all docs now use AIRR example files	task	major	resolved			immcantation 4.0.0	2020-04-23	2020-04-30
#157: Review NEWS	task	major	resolved		Kenneth Hoehn		2020-04-03	2020-04-06
#176: Consider adding .py to usage in command line documentation	proposal	major	resolved				2021-02-10	2021-06-20
#146: CreateGermlines --cloned: select one D using majority rule	proposal	major	new				2019-02-26	2019-02-26
#144: pRESTO style annotations and IgBlast AIRR output	proposal	major	new				2019-01-30	2019-01-30
#143: DefineClones doesn't work when db was created with MakeDb igblast --asis-calls	proposal	major	new				2019-01-23	2019-01-23
#147: Change-O modifications to support 10X data	enhancement	major	resolved		Jason Vander Heiden		2019-03-14	2021-01-18
#162: ConvertDb genbank should test the number of sequences in input and output match	enhancement	major	new				2020-05-03	2020-05-03
#152: Allow custom junction boundary definitions in MakeDb	enhancement	major	resolved				2019-10-15	2020-04-06
#125: Check performance of DefineClones with `--act set` in current version	enhancement	major	on hold		nima nouri		2018-04-29	2020-03-20
#87: MakeDb does not support multiple D segment junctions	enhancement	major	new		Jason Vander Heiden		2016-11-28	2020-03-06
#145: Support for 10X VDJ	enhancement	major	resolved		Roy Jiang		2019-02-21	2019-03-12
#134: Improve error reporting	enhancement	major	resolved				2018-08-07	2018-09-04
#63: Simple IgBLAST wrapper	enhancement	major	resolved		Roy Jiang		2016-02-26	2018-09-02
#114: Additional features to add to ConvertDb-genbank	enhancement	major	resolved		Jason Vander Heiden		2018-02-20	2018-04-13
#122: Write a reverse ConvertDb-genbank	enhancement	major	new		Jason Vander Heiden		2018-04-13	2018-04-13
#109: Cleanup Receptor and format parsing code	enhancement	major	resolved		Jason Vander Heiden		2017-11-16	2018-04-10
#84: Flesh out MakeDb unit tests	enhancement	major	new	2	ssnn		2016-11-22	2018-03-15
#108: Add AIRR format import to tools	enhancement	major	resolved		Jason Vander Heiden		2017-11-16	2018-03-10
#98: Steps to finish AIRR formats support	enhancement	major	resolved		Jason Vander Heiden		2017-08-17	2017-11-16
#105: Split ParseDb into ParseDb and ConvertDb	enhancement	major	resolved		Jason Vander Heiden		2017-11-02	2017-11-03
#100: Remove junctions with Ns from cloning	enhancement	major	resolved				2017-09-21	2017-10-01
#90: Parse CDR3 from IgBLAST v.1.5.0+	enhancement	major	resolved		Jason Vander Heiden		2017-03-01	2017-03-10

#197: Update IgBLAST example to include c_call

task

major

new

ssnn

2023-07-17

2023-11-06

#160: Verify all argument defaults are now AIRR column names

task

major

resolved

immcantation 4.0.0

2020-04-23

2020-04-30

#161: Verify all docs now use AIRR example files

task

major

resolved

immcantation 4.0.0

2020-04-23

2020-04-30

#157: Review NEWS

task

major

resolved

Kenneth Hoehn

2020-04-03

2020-04-06

#176: Consider adding .py to usage in command line documentation

proposal

major

resolved

2021-02-10

2021-06-20

#146: CreateGermlines --cloned: select one D using majority rule

proposal

major

new

2019-02-26

#144: pRESTO style annotations and IgBlast AIRR output

proposal

major

new

2019-01-30

#143: DefineClones doesn't work when db was created with MakeDb igblast --asis-calls

proposal

major

new

2019-01-23

#147: Change-O modifications to support 10X data

enhancement

major

resolved

Jason Vander Heiden

2019-03-14

2021-01-18

#162: ConvertDb genbank should test the number of sequences in input and output match

enhancement

major

new

2020-05-03

#152: Allow custom junction boundary definitions in MakeDb

enhancement

major

resolved

2019-10-15

2020-04-06

#125: Check performance of DefineClones with `--act set` in current version

enhancement

major

on hold

nima nouri

2018-04-29

2020-03-20

#87: MakeDb does not support multiple D segment junctions

enhancement

major

new

Jason Vander Heiden

2016-11-28

2020-03-06

#145: Support for 10X VDJ

enhancement

major

resolved

Roy Jiang

2019-02-21

2019-03-12

#134: Improve error reporting

enhancement

major

resolved

2018-08-07

2018-09-04

#63: Simple IgBLAST wrapper

enhancement

major

resolved

Roy Jiang

2016-02-26

2018-09-02

#114: Additional features to add to ConvertDb-genbank

enhancement

major

resolved

Jason Vander Heiden

2018-02-20

2018-04-13

#122: Write a reverse ConvertDb-genbank

enhancement

major

new

Jason Vander Heiden

2018-04-13

#109: Cleanup Receptor and format parsing code

enhancement

major

resolved

Jason Vander Heiden

2017-11-16

2018-04-10

#84: Flesh out MakeDb unit tests

enhancement

major

new

2

ssnn

2016-11-22

2018-03-15

#108: Add AIRR format import to tools

enhancement

major

resolved

Jason Vander Heiden

2017-11-16

2018-03-10

#98: Steps to finish AIRR formats support

enhancement

major

resolved

Jason Vander Heiden

2017-08-17

2017-11-16

#105: Split ParseDb into ParseDb and ConvertDb

enhancement

major

resolved

Jason Vander Heiden

2017-11-02

2017-11-03

#100: Remove junctions with Ns from cloning

enhancement

major

resolved

2017-09-21

2017-10-01

#90: Parse CDR3 from IgBLAST v.1.5.0+

enhancement

major

resolved

Jason Vander Heiden

2017-03-01

2017-03-10

Issues

Issues (1–25 of 99)