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Issues (1–22 of 22)

Title T P Status Votes Assignee Milestone Created Updated Actions
#161: findThreshold() returns NA
enhancement major resolved
#163: Warning message The dot-dot notation (..density..) was deprecated in ggplot2 3.4.0.
bug major resolved
#158: shazam::plotMutability() misaligns mutability bars and nucleotide motifs on "bar" style
bug major resolved
#149: exentedRegion branch lineage functions and `parent_sequence`
enhancement major resolved
#145: Test groupBaseline still works, with the new calcBaseline
task major resolved
#118: Improve docs
enhancement minor open
#142: make sure default is AIRR standard
task major resolved
#128: better error message for distToNearest
bug major closed
#116: Fix error in example/check
bug blocker closed
#109: make plotBaselineDensity work without warning for single-sequence input
bug major resolved
#88: Fix calcBaseline for data.frame and tbl
bug minor resolved
#79: In collapseClones and DistToNearest foreach implementation is suppressing errors
bug minor resolved
#61: distToNearest vignette. Add cross-sample example
task trivial resolved
#65: Use alakazam dependency version to build from the repo or from CRAN
task minor resolved
#1: Add cross-sample distToNearest mode
enhancement major resolved
#50: calcBaseline fails when calcStats=T
bug major resolved
#39: Alakazam related
bug major resolved
#35: swap reshape2 for tidyr
bug major resolved
#36: shm will not build vignettes if shm is not already installed
bug major resolved
#34: Swap plyr for dplyr
enhancement major closed
#38: R CMD Check vignette error
bug minor resolved
#30: Can we swap doSNOW for doParallel?
bug major resolved