1. Simon Roux Avatar Simon Roux
  2. Host_Prediction_Integration
  3. iphop

Issues

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Issues (101–125 of 126)

Title T P Status Votes Assignee Created Updated Actions
#58: Issues with adding MAGs to db at the VHM step - number issue?
bug major closed
#17: UnsatisfiableError: The following specifications were found to be incompatible with each other
bug major resolved
#46: Can't calculate distances using iphop add_to_db
bug major closed
#53: breakpoint for long time running
bug major closed
#45: outdated database ref
task major closed
#42: error running RaFAH
bug major closed
#36: wish KeyError
bug major closed
#34: Adding MAGs to standard database - [6] Add new genomes to VHM database...
enhancement minor closed
#37: key Error: with custom db
bug major closed
#31: Database for Blastn
bug major resolved
#30: KeyError: '3300006428_5_vs_RS_GCF_008727735.1'
bug major resolved
#32: Issue in adding test MAGs to database
bug major closed
#28: ValueError: could not convert string to float: 'LogLikelihood' and TypeError: Cannot cast array data from dtype('O') to dtype('float64') according to the rule 'safe'
bug major resolved 1
#29: Some problems with iphop installation using mamba.
bug major resolved
#19: Error with r-rcpp during rafah step
bug major resolved 1
#12: Database directory needs to be updated
bug trivial resolved
#13: GCA_002171125.1.mm is Empty
bug major resolved
#8: Run only specific steps (after step 8)
task minor resolved
#11: Any way to put all the WisH models into one main file?
enhancement minor resolved
#16: Command not found iphop add_to_db
bug major resolved
#15: iPHoP fails at step [6/2] "Get relevant RaFAH scores", FileNotFoundError for Full_Host_Predictions.tsv
bug major resolved
#14: 'Repr_taxonomy' in db_infos/Host_Genomes.tsv
bug major resolved
#5: KeyError: 'N match'
bug major closed
#9: Predict step [9/2]: AttributeError: 'float' object has no attribute 'split'
bug major resolved
#6: Can 'de_novo_wf' be placed by 'classify_wf'
proposal minor closed
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