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Issues (76–100 of 207)

Title T P Status Votes Assignee Version Created Updated Actions
#568: All-atom NMA algorithm and scoring function?
Q&A
task major resolved
#570: Score calculations normal modes (SIP,RMSIP)
Q&A
task major resolved
#574: pymol.dccm(cij, pdb, type="launch") not work
Q&A
bug major resolved
#547: compare displacement with dccm
Q&A
task minor resolved
Bio3D Project
#557: RMSD_ERROR
Q&A
task minor resolved
#558: Can RMSIP include trivial modes for calculation?
Q&A
task trivial resolved
#559: Ensemble PDB instead of .dcd for MD analysis ?
Q&A
task minor resolved
#561: aanma with rtb=TRUE still distorts residues
Q&A
task minor resolved
#562: why different values for fluct.nma(modes, mod.inds=c(7,total.no.of.modes)) and modes$fluctuations?
Q&A
task minor resolved
#537: NMA with non-standard residue name
Q&A
task trivial resolved
#488: Why does RMSIP value show greater than 1?
Q&A
bug trivial resolved
#538: How to specify whole protein structure in trajectory analysis?
Q&A
task minor resolved
#548: problem in visualizing results on pymol...
Q&A
task minor resolved
Bio3D Project
#544: omitting output lines in result
Q&A
task minor resolved
Bio3D Project
#519: Enlarging the graphical output of ensemble NMA calculations
Q&A
task major resolved
Bio3D Project
#522: confidence values
Q&A
task trivial resolved
#526: Can Bio3d analyse dimers ?
Q&A
task major resolved
Bio3D Project
#477: DCCM.XYZ using LMI method
Q&A
bug major resolved
#514: how to save dataset of PCA
Q&A
task blocker resolved
#480: bug in path - bio3d-nma-muscle invocation
Q&A
task major resolved
#493: clean.pdb for cleaning RNA pdb
Q&A
bug major resolved
#489: Not able to access MUSCLE online for sequence alignment in Bio3D
Q&A
bug major resolved
Bio3D Project
#486: Dimension mismatch in rmsip calculation
Q&A
bug major resolved
#464: Running bio3d from HPC
Q&A
task trivial resolved
#472: DCCM PLOT from GROMACS MD Trajectory
Q&A
enhancement major resolved
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