1. Bio3D Project Avatar Bio3D Project
  2. Bio3D
  3. bio3d

Issues

Filter by:

Advanced search

Issues (26–50 of 384)

Title T P Status Votes Assignee Version Created Updated Actions
#831: how to get the protein structure with PC values projection on trajectory
Q&A
task minor resolved
#830: Failure to retrieve annotations for some PDBs using pdb.annotate
bug minor resolved
#826: How to calculate RMSD and binding energy from the already docked ligand-receptor
Q&A
task minor resolved
#856: Analyzing Cellulose strictures using Bio3d
Q&A
task minor new
#853: How to extract part of protein complex with two molecules with Bio3D
Q&A
enhancement minor resolved
#844: Prof.
task minor resolved
#843: pdb annotate
bug minor resolved 1
#869: Output from pca analysis
bug minor resolved
#855: Loading in a list of `xyz` coordinates as a "dummy" PDB file
Q&A
enhancement minor new
#99: Deformation energies after ensemble NMA
enhancement minor resolved
#726: Option to include key for RMSIP matrix heatmap
Q&A
enhancement minor new
#842: apo and bound state dccm plot
task minor new
#823: How to extract subset of protein structure (PDB format) file based on a subsequence of protein
Q&A
proposal minor resolved
#817: PCA/NMA differences
Q&A
task minor new
#771: atom selection for nucleic acid residues
ToDo
task minor closed
#761: Reading in Fasta Sequence for PCA and NMA
task minor closed
#751: Calculate Mainchain and Sidechain Torsion/Dihedral Angles
Q&A
task minor closed
#746: pdbaln fails to read one PDB in a set of PDBs, unhelpful error message
Q&A
bug minor resolved
#787: fail to run "read.pdb"
Q&A
task minor closed
#791: Unable to run stride function
task minor closed
#795: pca.project doesn't work if structures to project are smaller than those used to make the pca
Q&A
task minor closed
#810: Error in cmdscale(dist(cent), k = k) : NA values not allowed in 'd'
task minor new
#804: 3Dmol.js with {r3dmol}
proposal minor new
#806: Reverse color palette
Q&A
task minor resolved
#797: path degeneracy
Q&A
proposal minor new
  2. 1
  3. 2
  4. 3
  5. 4
  6. 5
  7. 6
  8. …
  9. 15
  10. 16