1. Bio3D Project Avatar Bio3D Project
  2. Bio3D
  3. bio3d

Issues

Filter by:

Advanced search

Issues (1–25 of 303)

Title T P Status Votes Assignee Version Created Updated Actions
#963: How PCA contribution analysis reads residue numbers from PDB files instead of starting at 1
Q&A
task major new
#961: RMSF issue for multiple dcd file
Q&A
task major new
#960: cnapath calculation
Q&A
proposal major new
#953: How to save DCCM plot generated by Bio3d in linux operation system as png format?
Q&A
task major new
#952: Shiny Server license expiration
Q&A
proposal major new
#950: Lineal mutual information for ensemble NMA
Q&A
enhancement minor new
#949: Assessing Validity of PCA results
Q&A
task major new
#920: How to implement elbow method for clustering to find the optimal K and how to generate a sorted table of eigenvalues with eigenvectors?
Q&A
task major new
#921: blast.pdb does not return the PDBids of PDBs with identical sequences (so called "identical proteins" by NCBI) present in the PDB database.
Q&A
bug major new
#876: Is it possible to calculate RoG from a MD trajectory file?
Q&A
task major resolved
#905: Mira
Q&A
task major new
#903: Plotting PCA in 3d
Q&A
task minor new
#892: Coupling between communities
Q&A
enhancement major new
#883: help with using distance matrix calculation.
Q&A
task critical new
#900: What is the index I get from using identify() in a plotted PCA analysis?
Q&A
task minor new
#255: how the function seqidentity() calculate sequence identity and similarity?
Q&A
task trivial resolved
#891: How to modify B-factor column of a PDB file with Bio3D?
Q&A
enhancement minor new
#889: How to calculate distance matrix between two chain in a single PDB file?
Q&A
proposal minor resolved
#886: Importing DCCM and plotting
Q&A
task major new
#887: Issue with color change in RMSIP!!!
Q&A
task minor new 1
#880: read.pdb ATOM required formatting
Q&A
bug major new
#877: Not issue, but rather a request for information
Q&A
task minor new
#875: How to handle large data; 1us datasets for pca analysis
Q&A
task major new
#872: Torsion angle calculations for multi-model PDB file
Q&A
task minor new
#854: Web-based alignment for pdb2aln.ind
Q&A
enhancement minor new
  2. 1
  3. 2
  4. 3
  5. 4
  6. 5
  7. 6
  8. …
  9. 12
  10. 13