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  3. Chicago

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Issues (1–25 of 82)

Title T P Status Votes Assignee Created Updated Actions
#20: Error: cannot allocate vector of size ...
bug blocker resolved
chicagoTeam
#6: Calculating p-values [update in Delaporte package breaks compatibility]
bug blocker resolved
chicagoTeam
#1: Error in vecseq when running estimateTechnicalNoise
bug blocker resolved
#79: ERROR :: Oligos file, rmap and baitmap production (DpnII enzyme HICUP)
bug critical closed
#54: What does the following messenge mean after I ran runChicago.R
bug critical new
#67: Error during Runchicago.R
bug critical new 1
#57: Using juicer .hic for creating input files for Chicago
task critical new
#38: Chicago pipeline for R studio?
proposal critical resolved
#2: Error in get(binCol) : invalid first argument
bug critical resolved
chicagoTeam
#15: Input files and how to get them
task major resolved
#42: create_baitmap_rmap.pl: error:Could not find '1 310' in digest_fragments hash - the digest file and oligo probes file appear to be incompatible.
enhancement major new
#82: Where can Oligos file get?
bug major new
#81: How to get gene-wise score?
bug major new
#78: Error: between has been passed an argument x of type logical
bug major new
#80: How to creat my .baitmap file?
bug major new
#47: runChicago.R errors during "Reading NBaitsPerBin file" step
bug major new 1
#77: bam2chicago.sh breaking in the "Flipping all reads that overlap with the bait on to the right-hand side..."
bug major new
#76: makeBins.R generates spurious bait fragments
bug major new
#75: potential bug in estimateTechnicalNoise
bug major new
#73: issue with running makeDesignFiles_py3.py
task major new
#71: Question about output options in runChicago.R
enhancement major new
#70: runChicago.R error
bug major open
#69: Issue with bam2chicago.sh
bug major new
#43: 'bam2chicago.sh' problem
bug major new
#68: parameters setting for double cutters GATC (DpnII) and GANTC
proposal major new 3
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