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Issues (1–25 of 108)

Title T P Status Votes Assignee Milestone Created Updated Actions
#106: change groupGenes only_heavy default from T to F
bug major new
#102: update estimateAbundance, plotAbundanceCurve to work with mixed data
enhancement major new
#98: R CMD check is too slow for CRAN
bug blocker new
#97: Bioconductor packages don't install automatically
bug major new
#92: Add readAIRR() and update readChangeoDb(). They should accept a vector of files and check uniqueness
proposal minor new 1
#76: Document use of collapseDuplicates outside of makeChangeClone
enhancement major new
#72: Replace gridPlot with cowplot:plot_grid
enhancement minor new
#48: Add saturation curves
enhancement major new
#11: Need to validate the significance tests in testDiversity
task major new
#25: Add coverage curves
enhancement major new
#20: Parallelize diversity and abundance calculations
enhancement minor new
#108: Using multiple columns as groups in alphaDiversity
enhancement major open
#103: groupGenes needs updated naming and to figure out the locus list.
bug minor resolved
#105: ylim argument in plotAbundanceCurve has no effect
bug minor resolved
#104: readChangeoDb convert the sequence_id column into double, probably when ID start by a digit
bug major resolved
#101: Error running estimateAbundance
bug major resolved
#100: Clonal diversity
bug major resolved
#99: Calculate clonal frequencies
enhancement major resolved 1
#96: Use AIRR-ish names for output fields of calcJunctionAlignment
enhancement trivial resolved
#94: buildPhylipLineage fails on Windows
bug major resolved 1
#95: calcJunctionAlignment needs an example
task minor resolved
#91: basic, acidic and aromatic output fields from aminoAcidProperties() are always zero
bug minor resolved
#93: Have countClones handle NAs in clone_id
enhancement trivial resolved
#86: Execution halted for geneCounts() on c_call
enhancement minor resolved
#90: NA row for geneCounts() on d_call
bug minor resolved
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