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  2. B Cell Repertoires
  3. alakazam

Issues

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Issues (51–75 of 83)

Title T P Status Votes Assignee Milestone Created Updated Actions
#4: readChangeoDb should probably convert all columns to character type
enhancement minor resolved
#8: Remove globals for default colors
enhancement minor resolved
#5: collapseDuplicates could use binary distance instead for speed
enhancement minor resolved
#104: readChangeoDb convert the sequence_id column into double, probably when ID start by a digit
bug major resolved
#101: Error running estimateAbundance
bug major resolved
#100: Clonal diversity
bug major resolved
#99: Calculate clonal frequencies
enhancement major resolved 1
#94: buildPhylipLineage fails on Windows
bug major resolved 1
#85: IgPhyML lineage tree analysis does not work with test data
bug major resolved
#84: Help understanding diversity tests at a fixed diversity order
proposal major resolved
#83: groupGenes doesn't support TCR data
bug major resolved
#82: Review NEWS and vignettes
task major resolved
#81: Lower case in readIgphyml and combineIgphyml
task major resolved
#73: Old tidyverse SE functions are deprecated
enhancement major resolved
#75: New diversity functions
enhancement major resolved
#71: Count genes once per clone, or count one gene per clone?
enhancement major resolved
#62: collapseDuplicates
bug major resolved
#54: Adding indel support to buildPhylipLineage
proposal major resolved
#52: seqDist crashes on Mac
bug major resolved
#19: Incorporate prototype-topology package
enhancement major resolved
#44: countGenes. Error when using the clone argument with data from the older ExampleDb.gz
bug major resolved
#40: Example column names
bug major resolved
#41: Alakazam with older R version
proposal major resolved
#36: Won't build on R < 3.2.0
bug major resolved
#30: For aminoAcidProperties and related fx: test NAs
enhancement major resolved
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