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Issues (1–25 of 197)

Title T P Status Votes Assignee Milestone Created Updated Actions
#196: Can my IGH seq data be analyzed by this pipeline?
proposal minor closed
#191: # Failure download reference databases and setup IGDATA directory
bug major closed
#177: fetch_imgtdb.sh empty V files
bug major closed
#172: fetch_igblastdb.sh seems to be broken
bug major closed
#137: tbl2asn wrapper fails in some environments
bug minor closed
#183: DefineClones.py generates non determistic clone_id with nproc > 1
enhancement minor wontfix
#51: MakeDb does not handle IgBLAST mangling of sequence descriptions with tab characters
bug minor wontfix
#91: Provide a quiet option?
proposal trivial wontfix
#40: Swap rows and columns in distance models
enhancement trivial wontfix
#37: Split getDNADistMatrix and getAADistMatrix?
enhancement trivial wontfix
#85: Merge MakeDb main functions
enhancement minor wontfix
#125: Check performance of DefineClones with `--act set` in current version
enhancement major on hold
#188: C region in the igblast output breaks MakeDb.py
bug major resolved
#185: MakeDb all TRA goes to fail file
bug major resolved
#193: CreateGermlines.py fails with error 'Germline sequence differs in length from input sequence by X characters.'
bug major resolved
#195: ValueError: Missing one or more columns in heavy chain file: clone_id
bug major resolved
#186: MakeDb.py igblast fails with KeyError: '# Query:'
bug minor resolved
#192: createGermlines.py error
bug minor resolved
#189: Error in conda version of changeo
bug major resolved
#187: CreateGermlines.py fails
bug major resolved
#181: Update CreateGermlines to be consistent with clean_imgtdb.py and use the first allele
bug minor resolved
#184: Add merge command to IMGT parsings docs
enhancement minor resolved
#179: Assign Genes skips several rows of sequences
bug major resolved
#182: Error with MakeDb.py imgt
task minor resolved
#176: Consider adding .py to usage in command line documentation
proposal major resolved
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