1. Simon Roux Avatar Simon Roux
  2. Host_Prediction_Integration
  3. iphop

Issues

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Issues (51–75 of 126)

Title T P Status Votes Assignee Created Updated Actions
#80: Warning message: I could not understand the host so I will not use the corresponding line
bug major closed
#81: MAGs for custom host prediction decontamianton issue
proposal minor closed
#82: Unexpected Differences in iPhoP Results: Disappearing GTDB Hits in Custom Databases
bug major closed
#83: How to successfully run add_to_db when archaeal genomes are absent？
bug major open
#84: How to get the genome fasta files in the default database
enhancement minor closed
#85: Small database paths problem
bug minor closed
#100: decorated file not detected in step 8
bug minor on hold
#92: HOW TO understand output file in Wdir folder
enhancement major closed
#90: error with download the iPHoP host database
bug major closed
#93: Building custom database no archaea
bug major closed
#94: Detailed_output_by_tool.csv
task minor closed
#99: WIsH Issues with pipeline
bug trivial closed
#101: PHP issue
bug major closed
#104: Rafah not working
bug major closed
#102: Issue with add_to_db
bug major closed
#3: add MAGs to db
bug minor resolved
#98: FileNotFoundError: [Errno 2] No such file or directory: '/project/pi_rbeinart_uri_edu/michelle/iphop/iphop_db2/Aug_2023_pub_rw/db_infos/gtdbtk.ar122.decorated.tree'
bug major closed
#86: KeyError: 'GB_GCA_002163135.1_vs_RS_GCF_014196925.1'
bug major closed
#97: [Error] when "[6] Add new genomes to VHM database..." - feature to ignore non-fasta files (or directories) in --fna_dir
enhancement minor on hold
#95: implementation of stopped pipeline : "iphop predict"
bug minor closed
#91: add_db .DS_Store is empty
bug critical closed
#78: issue with conda iphop 1.3.3 and rafah
bug minor closed
#18: (Note) Adding MAGs to host DB
enhancement minor closed
#21: Is single-scaffold virus strictly the required input format for iphop?
bug major closed
#23: error in adding test MAGs to the standard database: IndexError
bug major closed
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