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Issues (1–25 of 126)

Title T P Status Votes Assignee Version Created Updated Actions
#950: Lineal mutual information for ensemble NMA
Q&A
enhancement minor new
#903: Plotting PCA in 3d
Q&A
task minor new
#900: What is the index I get from using identify() in a plotted PCA analysis?
Q&A
task minor new
#891: How to modify B-factor column of a PDB file with Bio3D?
Q&A
enhancement minor new
#889: How to calculate distance matrix between two chain in a single PDB file?
Q&A
proposal minor resolved
#887: Issue with color change in RMSIP!!!
Q&A
task minor new 1
#877: Not issue, but rather a request for information
Q&A
task minor new
#872: Torsion angle calculations for multi-model PDB file
Q&A
task minor new
#854: Web-based alignment for pdb2aln.ind
Q&A
enhancement minor new
#831: how to get the protein structure with PC values projection on trajectory
Q&A
task minor resolved
#826: How to calculate RMSD and binding energy from the already docked ligand-receptor
Q&A
task minor resolved
#856: Analyzing Cellulose strictures using Bio3d
Q&A
task minor new
#853: How to extract part of protein complex with two molecules with Bio3D
Q&A
enhancement minor resolved
#855: Loading in a list of `xyz` coordinates as a "dummy" PDB file
Q&A
enhancement minor new
#726: Option to include key for RMSIP matrix heatmap
Q&A
enhancement minor new
#823: How to extract subset of protein structure (PDB format) file based on a subsequence of protein
Q&A
proposal minor resolved
#817: PCA/NMA differences
Q&A
task minor new
#751: Calculate Mainchain and Sidechain Torsion/Dihedral Angles
Q&A
task minor closed
#746: pdbaln fails to read one PDB in a set of PDBs, unhelpful error message
Q&A
bug minor resolved
#787: fail to run "read.pdb"
Q&A
task minor closed
#795: pca.project doesn't work if structures to project are smaller than those used to make the pca
Q&A
task minor closed
#806: Reverse color palette
Q&A
task minor resolved
#797: path degeneracy
Q&A
proposal minor new
#781: Geostas with ensemble
Q&A
task minor new
#769: Side chain Dihedral PCA
Q&A
task minor new
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