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Issues (1–25 of 61)

Title T P Status Votes Assignee Version Created Updated Actions
#953: How to save DCCM plot generated by Bio3d in linux operation system as png format?
Q&A
task major new
#905: Mira
Q&A
task major new
#891: How to modify B-factor column of a PDB file with Bio3D?
Q&A
enhancement minor new
#889: How to calculate distance matrix between two chain in a single PDB file?
Q&A
proposal minor resolved
#853: How to extract part of protein complex with two molecules with Bio3D
Q&A
enhancement minor resolved
#726: Option to include key for RMSIP matrix heatmap
Q&A
enhancement minor new
#518: Employing consistent communities in network analsis for direct comparison between systems
Q&A
proposal major resolved 2
#784: PCA analysis (genration of blue red and white colored residues motion in pdb file)
Q&A
task critical new
#783: error in launching pymol
Q&A
task major new
#749: per-residue eigenvalues in PCA?
Q&A
enhancement major resolved
#747: How to assign certain residues for alignment and get analysis results for all residues?
Q&A
task major new
#741: Error in the 3D visualization of dccm
Q&A
task major new
#735: pdbaln throws an error with specific PDB, cif or xml files
Q&A
bug major new
#729: muscle alignment
Q&A
task minor new
#715: How to do inverse atom selection in Bio3D version2.3.0
Q&A
bug major resolved
#696: DSSP plotting vs residues number
Q&A
proposal major new
#691: Clustering trajectories and PCA data
Q&A
task critical new
#543: Suboptimal path calculation question
Q&A
bug minor resolved
#681: correlation analysis
Q&A
task minor closed
#689: plot.dccm and network analysis
Q&A
task trivial resolved
#643: Error in dssp.pdb(pdb) - unhelpful error message
Q&A
proposal minor closed
#659: Plot values of principal components (instead proportion of variance)
Q&A
task minor resolved
#660: Unit of the eigenvalues of the PCA
Q&A
task minor resolved
#667: Phi/Psi error?
Q&A
task major closed
#672: How to read large dcd files; change X-axis to Time (ns); plot secondary structure throughout simulation; plot free energy landscape?
Q&A
task critical new
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