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Issues

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Issues (1–25 of 58)

Title T P Status Votes Assignee Created Updated Actions
#59: QCFasta restart from incompleted/updated run with large number of inputs is very slow
enhancement minor new
#56: BamRecalibrator
proposal major closed
#55: QCFasta discarded percentages for single reads
bug minor closed
#58: bulk RNA-seq alignment pipeline needs to be complete
task major resolved
#57: ATAC-Seq preprocessing pipeline is not complete
task major new
#54: FusionAnalyzer
enhancement major new
#53: FusionCaller
enhancement major new
#36: Prettify ExprTableReport
enhancement major resolved
#38: Remove references to $ANDURIL_HOME
bug major new
#51: Readme
enhancement minor resolved
#52: QCfasta test case 6
bug major new
#46: gtfparser does not work when gtf has a header
enhancement major resolved
#45: qcfasta error message
proposal major new
#49: fusionAnalyzer crashes when simultaneous instances (add to documentation)
bug major resolved
#48: folder2array has no testcases
bug major resolved
#50: ExprTableReport reference input forces Treatment column
bug major new
#47: ExpressionTableReport
enhancement major new
#44: ExprTableReport
bug major new
#43: FusionAnalyzer update for skipping filtering
enhancement major resolved
#42: DEan
bug major resolved
#32: DiffExprSeq is not up to date
bug major resolved
#22: UMI support QCFasta
proposal major resolved
#29: MultiQC entry to QCFasta
proposal minor new
#13: Align function is old
bug major resolved
#41: AssemblyQuality failed testcases
bug major new
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