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  3. alakazam

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Issues (1–25 of 83)

Title T P Status Votes Assignee Milestone Created Updated Actions
#95: calcJunctionAlignment needs an example
task minor resolved
#82: Review NEWS and vignettes
task major resolved
#81: Lower case in readIgphyml and combineIgphyml
task major resolved
#29: Remove getPropertyDistance for v0.2.1
task trivial resolved
#84: Help understanding diversity tests at a fixed diversity order
proposal major resolved
#33: getGene returns first not Not Localized results
proposal minor resolved
#54: Adding indel support to buildPhylipLineage
proposal major resolved
#41: Alakazam with older R version
proposal major resolved
#99: Calculate clonal frequencies
enhancement major resolved 1
#96: Use AIRR-ish names for output fields of calcJunctionAlignment
enhancement trivial resolved
#93: Have countClones handle NAs in clone_id
enhancement trivial resolved
#86: Execution halted for geneCounts() on c_call
enhancement minor resolved
#88: Clarify file I/O documentation
enhancement minor resolved
#68: Added newick import/export
enhancement trivial resolved
#73: Old tidyverse SE functions are deprecated
enhancement major resolved
#75: New diversity functions
enhancement major resolved
#71: Count genes once per clone, or count one gene per clone?
enhancement major resolved
#69: Allow ungrouped data in rarefyDiversity and estimateAbundance
enhancement minor resolved
#64: Make length mismatch warning more meaningful in makeChangeoClone
enhancement minor resolved
#65: countGenes in Gene.R
enhancement minor resolved
#53: Add clone count test to countGenes unit tests
enhancement minor resolved
#34: More diversity plots
enhancement minor resolved
#61: See if there is way to add dispatching to plotAbundance
enhancement minor resolved
#60: Allow non-uniform sampling in rarefyDiversity
enhancement minor resolved
#55: Add publication reference to Description field for v0.2.9
enhancement trivial resolved
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